Lutra lutra (Eurasian river otter): 125086392
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Entry
125086392 CDS
T08100
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125086392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125086392
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125086392
mRNA cycle factors
Common to processing body (P body) and stress granule
125086392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
125086392
NCBI-ProteinID:
XP_047561640
LinkDB
All DBs
Position
15:19429064..19524281
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AA seq
1215 aa
AA seq
DB search
MRNWMFLQIVIVGENVSFKSQMRTGNLKSEEHLKSSNIRQAEVLKADMTDSKLGPAEVWT
SRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANL
SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC
QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR
SIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSP
LREKLEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQL
LALFMSFLGILCKCPLQNKSQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWP
WLISLLNSFHPHEEDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQ
RQIRQQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSEAKENLILQEPSM
VESLAADGNPGLKSVLSTGRNLSNNCDPGEKPMVTFKENIKPREVNRDQGRSFPPKEVRR
DYSKGITVTKNEGKKDNNKRKTETKKCTLEKLQETGKQSVAVQVKSQTELRKTPVSEARK
TPVTQTPSQASNSQFIPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSV
PGTFLQPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQPPQPPSQQPLTSLPAQP
TAQSTNQLQVQALAQQQSPTKAVPALGKSPPHHSGFQQYQQADGSKQLWNPPQVQGPLGK
IMPVKQSYYLQSQDPIKLFEPSLQPPVMQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWD
SSYSMADNRAVMAQQANMDRRGKRSPGVFRPEQDPVPRMPFEDPKGSPLLPPDLLKSLAA
LEEEEELIFSNPPDLYPALLGPLASLPGRSLFKSLLEKPSELMSHSSSFLSLTGFSLNQE
RYPNNSVFNEVYGKNLTTSSKTELNPSLAPQETSLYSLFEGTPWSPSLPASSDHSTPASQ
SPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYLS
ATSSSESSWHQASTPSGTWAGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQ
KQKQQRGQGTMNPPH
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgagaaattggatgttcttgcagatagtcattgtgggagaaaacgtttcatttaagtcc
cagatgaggaccggaaacttgaaatcagaggagcatctgaaatcaagtaatattaggcag
gcagaagtcctgaaggctgacatgacagattctaagctgggtccggctgaggtctggaca
tccagacaggctctgcaggacctgtaccagaaaatgctagttactgatttggaatacgcg
ttagacaagaaagtagaacaggatctctggaatcatgcctttaagaatcagatcacaaca
ctacaaggccaggcaaagaatcgagcaaacccgaatcggagtgaagttcaggcaaacctt
tctctgttcctagaggcagctagtggcttctatactcagttattacaagaactatgtaca
gtgtttaatgtagatttaccatgccgtgtgaagtcttcccaattgggaattatcagcaat
aaacagacgcataccagcgccatagtgaagccacagtctagctcctgctcctatatctgc
cagcactgcctcgtccaccttggagacattgctcgatacagaaaccagaccagccaggca
gagtcctactataggcacgcagctcagcttgtcccctctaatggtcagccttataatcag
ttggctattttagcttcttccaaaggagaccatctgaccacaattttctactactgcaga
agcatcgctgtgaagttccctttcccagctgcctccactaatctacaaaaagcactttct
aaagcactggaaagccgggatgaggtgaaaaccaaatggggtgtttctgacttcatcaag
gcctttattaaattccacggtcatgtgtacctgagtaagagcttggaaaagttgagccct
cttcgagagaaattggaagaacagtttaagaggctgctattccaaaaagctttcaactct
cagcagttagttcacgtcactgtcattaatctgtttcaacttcatcaccttcgtgacttt
agcaatgaaacggagcagcatagttatagccaagatgagcagctgtgttggacacagttg
ctggccctctttatgtcttttcttggcatcctgtgcaagtgtcctctccagaacaagtct
caggaggagtcctacaatgcctatccccttcctgcagtcaaggtctccatggactggctg
agactcagacccagggtctttcaggaagcagtggtggatgaaagacagtacatttggccc
tggctaatttctctcctaaatagtttccatccccatgaagaggatctttcaagtactaat
gctacaccgcttccagaggagtttgagttacaaggattcttggctttgagaccttctttc
aggaacttggatttttctaagggccaccagggtattacaggagacaaagaaggtcagcag
cgacagatacggcagcagcgcttgatctctataggcaagtggatcgccgataaccagcca
aggctgattcagtgtgaaaatgaggtagggaaattgttgtttatcacagaaatcccagag
ttaatactggaagaccccagtgaagccaaagagaacctcattctgcaagaaccatccatg
gtagagtccctggctgcggacgggaacccaggactgaaatcagtgctgtccacgggccgc
aatctgagcaacaactgtgacccaggagagaagcctatggtcaccttcaaagagaacatt
aagccgcgagaagtgaacagagaccaaggaagaagttttcctcccaaagaggtgagaagg
gactatagcaaaggaattactgtaactaagaatgaaggaaagaaggacaacaacaagagg
aaaacagaaaccaagaaatgcaccttagaaaagttacaggaaacaggaaagcagagtgtg
gcagtgcaggtaaaatcccagacagaactaagaaagactccagtgtctgaagccaggaaa
acacctgtaactcaaaccccaagtcaagcaagtaactcccagttcatccccattcatcac
cctggagccttccctcctcttcccagccggccagggttcccgccccccacatatgttatt
ccccctcctgtggcattttctatgggctcaggttacaccttcccagctggtgtttctgtc
ccaggaacctttcttcagcctacagctcactctccagcaggaaaccaggtgcaagctggg
aaacagtcccacattccttacagccagcagcggccctctggaccagggccaatgaaccag
ggacctcaaccaccacagccaccttcccagcaaccccttacatctctaccagctcagcca
acagcacagtctacaaaccagttgcaggttcaagctctagctcagcaacaatcccccaca
aaagctgtgccggctttggggaaaagccctcctcaccactccggattccagcagtatcaa
caggcagatggctccaaacagctgtggaatccccctcaggttcaaggcccattagggaaa
atcatgcctgtgaagcagtcctactaccttcagtcccaagaccctataaaactgtttgag
ccgtcattgcaacctcctgtaatgcagcagcagcctctagagaaaaaaatgaagcctttt
cccatggagccatataaccataatccctcagaagtcaaggtcccagaattctactgggat
tcttcttacagcatggctgataacagagctgtaatggcccagcaagcaaatatggaccgc
aggggcaaacggtcaccaggagtcttccgtccagagcaggatcctgtgcccaggatgcca
tttgaggaccccaagggctcccctctgcttcctccggacctgttaaagagtctggctgcc
ttggaggaagaggaagagctgattttttctaaccctcctgatctttacccagctttgctg
gggcctctcgcctctcttcctggacggagcctctttaaatccttgttggagaagccctcg
gagctcatgtcccattcctcctctttcttgtccctcaccggattttctctcaatcaggaa
agatacccgaataacagtgtgttcaatgaggtatatgggaaaaacctgacaaccagctcc
aaaacagaacttaatccttcgctggccccccaggagacatcactgtactccctcttcgaa
gggaccccctggtctccgtcccttcctgccagttcagatcattcaacaccagccagccag
tctcctcattcctctaacccaagcagcctgccaagctcccctccaacacacaaccataat
tctgttccattctccaactttggacccattggaactccagataacagggataggagaact
gcagatcggtggaaaactgataagccagccatgggtgggtttggcattgactatctctca
gcgacatcatcctctgagagcagttggcatcaggccagcactccaagtggcacctgggca
ggccatggcccctccatggaggattcctctgctgtcctcatggaaagcctaaagtctatc
tggtccagttccatgatgcatcctggaccttccgctctggagcagctgttaatgcagcag
aagcagaaacagcagcggggacaaggcaccatgaaccctccacactga
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integrated database retrieval system
