Lutra lutra (Eurasian river otter): 125086762
Help
Entry
125086762 CDS
T08100
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
llv
Lutra lutra (Eurasian river otter)
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125086762
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
125086762
3'-5' decay
Other 3'-5' decay factors
125086762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
zf-CCCH_4
AAA_22
AAA_7
Bac_DnaA
AAA_16
Mg_chelatase
AAA_5
Motif
Other DBs
NCBI-GeneID:
125086762
NCBI-ProteinID:
XP_047562092
LinkDB
All DBs
Position
16:complement(13309822..13479240)
Genome browser
AA seq
1945 aa
AA seq
DB search
MEDRRAEKSCEQACESLKRQDYEMTLKHCTEALLSLGQYSMADFPGPCPLEIESIKIESL
LYRIASFLQLKNYGQADEDCRHVLGEGLAKGDGAFQAVLCCMQLKGKLQLVSSILAKSLT
GESLNGMVTKDLTRLKTLLTETETATSNVLSGYHVEDLEGGSCNGWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRYASRLIKLKQQNENKQLSGSYMETLI
EKWMNSLSPEKVLSECIEGVKVEHNPDLSVTVNTKKSHQTWTFALTCKPARMLYRVALLY
DAHRPHFSIIAISAGDSTTQVSQEVPENCQEWIGGKMAQNGLDHYVYKVGIAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMQAKQQLVTTAKRWDSSSKTIIDFEPNE
TTDLEKSLLIRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNL
KVQLQILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVP
KEKLVQTQGTKEKVYEATIEEKTKEYIFLRISRECCEELNLRPDYDTQVELQFQLNRLPL
CEMHYALDRIKDNGVLFPDTTMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENNSLHG
ITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHSGNTNKLQQSPPKGKSLHHTQND
HFQNDGIVQPNPSVLIGNPIRAYTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNVVMSVPLPVPWTGYQGRFAVDPRILTHQAAMAYNMNLLQTHGRGSPIPYGLGHHPPV
SIGQPQNQHQEKEQHEPSRNGKSDTNNPGPEINKIRTPEKKPTESKQIDLESNPQNRSPE
SRPGVVYPNTKFHRKDNLNPRHINLPLPAPHAQYAIPSRHFHPLPQLPRPPFPIPQQHAL
LNQQQSNLPEQPNQMPPQPNQVVPPPNPLNQLTPQPPPQLSPAYQAGPNSAFFNSAVSHR
PQSPPAEAVIPEQQPPPMLQEGHGPLRAIAQPGPLLPSHLSNFTDENPPGLPVGEALDRI
HGSVALETLRQQQRAVQQWTEHHAYLSQGSIPYPHHHRPHPHLQHLPQTPIGLHQPPVRA
EWKLPSGAEDEAETTDSRFQDLIRELSNRDQSETRELAEMPPPQSRLLQYRQIQTRSPPA
VPSXPSSTDHSSHFXNFNDNSRDIEVANNPAFPQRLPPQIFSSPFSLPSEHLAPPPLKYL
APDGAWTFANLQQNHLMGPXFPYGLPPLPHRPPQNPFVQIQNHQHAIGQEPFHPLSSRTV
SSSSLPSLEEYEPRGPGRPLYQRRISSSSVQPCSEEVSTPQDSLAQCKELQDHNNQSSFN
FSSPESWVNTTSSTPYQNIPCNGSSRTAQPRELIVPPKTVKPPEDQLKSENLEVSSSFNY
NVLQHLGQFPPLMPNKQIVESANSSSQQSSGGSKPAMSYASALRAPPKPRPQPEQAKKSS
DPLSLFQELSLGSSSGSNGFYSYFK
NT seq
5838 nt
NT seq
+upstream
nt +downstream
nt
atggaagacagaagagctgagaagtcatgtgaacaagcgtgtgaatcacttaagaggcag
gactatgaaatgaccctcaagcactgcacagaggccctcctttctcttggccagtactcc
atggccgacttcccagggccatgtccactggagatagaaagcatcaaaatcgagagtctt
ctttacagaattgcctcatttttgcaactgaaaaactatgggcaagctgatgaagattgt
aggcatgtgctgggagaaggcctggccaagggagatggggcctttcaggcagtgctctgc
tgtatgcagctgaaaggaaagcttcaactggtatccagcattcttgccaagtcactgaca
ggagagtccctgaatgggatggtaacaaaagatttgacaagactaaaaacacttctcaca
gaaacagagacagccactagtaacgtcctgtctggatatcacgtggaagacttggaaggg
ggatcttgtaatggttggcatttccgcccaccacctaggggaatcacaagcagcgaggaa
tatactttgtgtaaaagatttttagagcaaggaatctgtaggtatggtgcgcagtgtact
tcagcacattcccaggaagaactagcagaatggcagaaaagatatgcttcacgcttgata
aaattgaaacagcaaaatgagaataaacagctctcaggcagttacatggaaaccttgata
gaaaagtggatgaattcattatctcctgagaaagtgcttagtgaatgtatagaaggagta
aaagtagagcataatcctgatctgtcagtcactgtcaacaccaaaaagtctcaccagaca
tggacctttgctcttacttgtaagcctgcaagaatgctgtatcgtgtagcattgctttat
gatgctcatcgtcctcattttagtatcattgcaatatctgccggagatagtactacccag
gtatcacaagaagtcccagaaaactgtcaagaatggataggaggaaagatggcccaaaat
ggattagatcattacgtgtataaagtcgggatagcatttaacacagaaatatttggaact
tttcgccaaaccatagttttcgactttggattggaaccagtactcatgcaaagagtaatg
attgatgcagcttctacagaagatcttgaatacctgatgcaggcaaaacaacagctagta
accacagctaagcgttgggattcttcttctaagactattatagattttgaacccaatgaa
actactgatttggagaagagccttcttatcagataccaaattcctctctctgctgaccag
ctctttacccagtccgttttagacaaatcgttgaccaagaccaactatcagtcacggctg
catgaccttctttatattgaggagatagcccagtataaagaagtcagcaagttcaacctt
aaagtgcagttgcagattctagcaagtttcatgctcactggagtttctggaggtgcaaag
tatgctcagaatggacaactttttggtcgctttaagcttactgaaacactttctgaagat
actttggctggacggctggtgatgaccaaagtcaatgctgtttatttattaccagtccct
aaagagaagttagtacagacccagggaaccaaagagaaggtttatgaagctactattgaa
gaaaaaacaaaagaatatatatttttaaggatatccagggaatgctgtgaagaacttaat
cttcggcctgattatgacacacaggttgaacttcagtttcaattaaatcgattacccctc
tgtgaaatgcattatgcgctagacaggatcaaggacaacggggttttgtttccagacacc
actatgactccaaccataccttggagtcctaacagacaatgggatgagcagttggatcct
cggctaaatgcaaaacagaaagaggctgtcctggccattacaactccactttcaatacag
ctgcctcctgttctcatcattggaccctatgggacaggcaaaacattcactctagctcag
gctgtcaagcacatactccagcagcaggagacgagcaggatcctcatttgcacccattct
aatagtgctgctgacctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcaagacctctcagggtatatttcagaaatcgctgggtaaagactgtccaccca
gttgtgcatcagtactgtttgatctcaagcgcacattccacctttcagatgccacagaaa
gaagatattcttaaacaccgagtggttgttgttacattgaatacttcccagtacctctgt
cagttggaccttgaacctgggttttttacacacattctattagatgaagctgcccaggcc
atggagtgtgaaaccattatgcctctagcattagcaactaaaaacactcggattgtcttg
gctggtgaccacatgcagctcagtccttttgtttacagcgagtttgccagggagagaaac
cttcatgtttcattacttgatcgactctatgagcattaccctgctgagtttccgtgtagg
atcctcctctgtgagaactaccgctcccatgaagctatcatcaattacacctctgagctc
ttctatgagggcaaattgatggccagtggaaagcaaccagcacacaaggatttctaccca
ctaactttctttacagcacgaggggaagatgtacaagaaaaaaacagcacagctttttat
aataatgcagaggtattcgaagtggtggaacgtgtggaagagttgagaaggaagtggcca
gtagcgtgggggaagttggatgatggcagtattggtgtggtcactccatatgctgatcaa
gtgttcaggatacgtgctgaacttcgaaaaaagagattatctgatgttaatgtagaaagg
gtgctaaatgttcaaggaaaacagttcagagttttgtttcttagcacagtgcgtacaagg
catacttgtaaacataaacagacaccgattaagaagaaagagcagctgctggaagattcc
acggaggatttagattatggttttctctctaactacaaacttctcaatactgccatcaca
agagcacaatccctggttgctgtggtgggcgatcccattgctctgtgctctattggaaga
tgcaggaaattttgggaacggtttattgccctgtgtcatgaaaataatagcctacacgga
atcacttttgaacagatcaaagctcagctagaggctttagaactcaagaagacgtatgtg
ttgaatccactggcgcctgaatttatcccccgggctctacgactgcagcattcaggaaat
accaacaaactgcagcagtcaccccccaaggggaaaagtctccatcatacccagaatgat
catttccagaacgatggaattgttcagcccaatccttctgtacttattggcaatcctatt
agagcatatactcctccaccccctcttggacctcacccaaatttggggaaatctccaagc
cctgttcaaagaatagatcctcacactgggacaagtattctttacgtacctgctgtctat
ggagggaatgtagttatgtcggtgcctttacctgtaccatggacagggtaccagggcaga
tttgcagtcgatcctcggatccttacacaccaggcagcgatggcctacaatatgaacctc
ttacagacacacggacgggggtctcccataccgtatggccttgggcaccatccacctgtc
agcatagggcagccgcaaaaccagcatcaggagaaggagcaacatgagccaagtcgaaat
ggtaaaagtgatacaaataatcctggacctgaaattaataagattcgaacaccagagaaa
aagcctacagaatcaaaacagatcgatttggaatcaaatccacagaacagaagtcctgag
tcgcgtcctggtgttgtttatcccaataccaaatttcatcgcaaagataatctcaacccg
agacacataaatcttcctctcccggctccccacgcacagtatgccatccccagtcgtcat
tttcatccccttccccagctacccagaccaccgtttccgattccacagcagcacgccctg
ttaaatcagcagcagagtaatttgcctgaacaaccaaatcagatgccaccccagccaaat
caggtagtcccgccaccaaatccgctgaaccagctgactccgcagccgcctcctcagctt
tctcctgcctatcaggcaggacccaacagcgctttctttaatagcgccgtgtctcaccgc
ccgcagtccccacccgcagaggctgtgatccccgagcagcagccgcctcccatgctgcag
gaaggccatggtcctctgcgagccatcgcacagcccggccccctccttccgtcacatctg
agtaacttcactgatgagaaccccccaggattgcctgtaggggaggctttagatcgtatt
cacgggagtgtagctctagaaacactaaggcagcagcaacgtgcggttcagcagtggact
gagcatcacgcatatctcagtcagggcagtattccgtacccgcaccatcaccgcccgcat
cctcacctccagcaccttcctcagacgcccatcggattgcatcagcccccagtgagagca
gagtggaagctccccagcggtgccgaagatgaagcagaaaccacagactccaggtttcaa
gacttaatcagagaactgtctaatcgtgatcaaagtgaaacacgggaactagctgaaatg
ccaccacctcaatcaagacttttgcaatatagacaaattcagactaggagcccaccagca
gtcccatctnccccatccagcacagaccacagtagccactttnctaactttaatgacaac
agcagagacattgaagtagccaacaacccagcatttccacagcgcctaccgccccagata
ttcagctcgcctttctcgttgccatctgaacaccttgcccctcctcccttgaaatacctg
gcacctgacggagcatggacttttgctaacttacaacagaatcacctaatggggccgngg
tttccctatggcctacctccattgccgcacaggccaccgcaaaacccttttgtacaaata
cagaatcatcaacatgctattggtcaagagccatttcacccattgtcatctcgaacagta
tcttcttcttcgctccctagcttagaagagtatgaacccagaggacctggtcggcccttg
taccaaagaagaatctcatctagctcagtccagccttgttctgaagaagtaagcactcct
caagacagtcttgctcagtgtaaagagcttcaggaccataataaccaatcttctttcaac
ttttcatccccggaatcctgggtaaacaccacctcatctaccccctatcagaacattccg
tgtaatggatccagcaggacagctcagcccagagagttgatcgttccacccaagaccgtc
aaaccccctgaggatcagctgaagtctgagaacctcgaggtgtccagttccttcaactat
aatgtgctgcagcatctcggccagttcccccctctcatgcccaacaagcagatcgtggag
tcggccaacagcagtagccagcagagctctgggggcagcaagcccgccatgtcttatgcc
agtgctttgcgggcccctcccaagcccaggccccagcctgagcaggccaagaagagtagc
gaccctctgtctctgttccaggaacttagcctggggagctcatcaggcagcaatggcttt
tactcctattttaaataa
DBGET
integrated database retrieval system
