Lutra lutra (Eurasian river otter): 125087085
Help
Entry
125087085 CDS
T08100
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
125087085
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
llv04054
]
125087085
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125087085
Pattern recognition receptors [BR:
llv04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125087085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
Helicase_C
ResIII
DEAD
SWI2_SNF2
AAA_22
AAA_19
Terminase_6N
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125087085
NCBI-ProteinID:
XP_047562949
LinkDB
All DBs
Position
16:20286824..20312831
Genome browser
AA seq
679 aa
AA seq
DB search
MELRPYQWEVIMPALEGKNIIVWLPTGAGKTRAAAYVAKRHLETVDRAKVVVLVNRVHLV
SQHCEEFSRMLDRRWAIITLSGDMGPRAGFGHLARSHDLIICTAELLQMALTSPEEEEHV
ELNAFSLLVVDECHHTHKDTVYNVILSRYLEHKLQRMRPLPQVLGLTASPGTGGASTLKG
AIDHILQLCANLDTWRIMSPKTYLPQLQELRPQPCKQYNLCRRCTQDPFGDTLKKLMDQI
HNRLEMLELSRDFGTQNYEQQVVELSQAAAKAGLQERRVYALHLRRYNDALLIHDTVRAV
DALDWLRDFYDKERATKTQILQAERWLLALFDDYKNELAHLATCSPENPKLEMLEQILRE
QFGGSDDSPRGIIFTQTRQSVHSLLLWLQQQPGLRTMDIRADLLIGVGNSSQNTHMTQRD
QQEVIRKFQTGTLNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISMVQARGRARAGQSKY
SFVATQGSRELRRELTNEVLERLMEQAVAAVQEMDEAEYQAKIRDLQRSTLVKRAARAAQ
RESQRQQFSAEEVQLLCVNCMVAVGHGSDLRKVEDAHHVNVNPNFSIYYSVSRGAVVIDR
AFKDWKPGGTIHCRNCGEAWGLQMIYKSVKLPALRVRSMLLQTPQGRVQSKKWSRVPFPV
PDFDYLQHCTQNLADLSLE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagttgcgaccctaccagtgggaggtaatcatgcctgccctagagggcaagaacatc
atcgtgtggctgcccacgggggctgggaagacccgggcggctgcgtacgtggccaaaagg
catctggagactgtggacagagccaaggtggtggtactggtcaacagggtgcacctggtg
agccagcattgtgaggagttcagccgcatgctggacagacgctgggccattataaccctg
agcggggacatggggccacgagctggctttggccacctggcccggagccatgacctgatc
atctgcacagcggagctgctccagatggcgctgaccagccccgaggaggaggagcacgtg
gagctcaatgccttctccctgctcgtggtggatgagtgtcaccacacgcacaaagacact
gtctacaatgtcatcctgagccggtacttagagcataaactccagaggatgcggcccctg
ccccaggtgctggggctcacagcctccccaggcaccggcggggcctccacgctcaagggg
gccatcgaccacatcctgcagctctgtgccaacctggacacatggcgcatcatgtcaccg
aagacctacctcccccagctgcaggagctcaggcctcagccctgcaaacagtacaacctc
tgccgcaggtgcacccaggacccatttggggacacactgaagaaactcatggaccaaatc
cacaaccgcctggagatgctcgagttgagccgggacttcgggacgcagaattacgagcag
caggtggtggagctgagccaggctgcggccaaggccgggctccaggagcgtcgggtctac
gctcttcacctgcggcgctacaacgatgcgctgctcattcacgacacggtccgtgctgtg
gacgccctggactggctgcgggatttctacgacaaggagcgcgccacgaagacccagatc
ctgcaggccgagcgctggctgctggcgctgttcgatgattacaagaatgagctggcccac
ctggcaacgtgcagcccggagaacccaaaactggagatgctagaacagatcctgcgggag
cagtttgggggcagcgatgacagcccccggggcatcatcttcacgcagacccgccagagc
gtccactccctcctgctctggctccagcagcagccgggcctgcggaccatggacatcagg
gctgacctgctgatcggggtggggaacagcagccagaacacccatatgacccagagagac
caacaagaagtgatccggaagttccagactggcaccctgaacctcctggtggccacgagt
gtggcggaagagggactggacatcccccagtgcaacgtggtggtgcgctacgggctcctg
accaacgagatctccatggtccaggccaggggccgcgcccgggctggtcagagcaaatac
tcgtttgtggcaacccaaggcagtcgggagctgcggcgggagctgaccaacgaggtcctg
gagaggctgatggagcaggccgtggccgctgtgcaggagatggatgaggccgagtaccag
gccaagatccgggacctgcagcggagcactctggtcaagcgggcggcccgggcagcccag
cgggagagtcagcggcagcagttctcggctgaggaggtacagctcctctgtgtcaactgc
atggtggccgtgggccatgggagtgacctgcggaaggtggaggacgcccaccacgtcaac
gtgaaccccaacttctcgatctactacagtgtctcccggggggctgtggtcattgacaga
gccttcaaggactggaagcctgggggtaccattcactgcaggaactgtggggaggcctgg
ggtctgcagatgatctacaagtcagtgaagctgccggcgctccgggtccgcagcatgctt
ctacagacgccccaggggagagtccagtccaagaagtggtcccgcgtgcccttcccagtg
cctgactttgactacctgcagcactgcacccagaacctggcggacctctccttggaatga
DBGET
integrated database retrieval system
