Lutra lutra (Eurasian river otter): 125087448
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Entry
125087448 CDS
T08100
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125087448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
llv03041
]
125087448
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125087448
Spliceosome [BR:
llv03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125087448
Complex B
125087448
Complex C
U2 SnRNP specific factors
125087448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
125087448
NCBI-ProteinID:
XP_047563735
LinkDB
All DBs
Position
16:complement(14920971..14962170)
Genome browser
AA seq
949 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPESPIPSATKGIPGFGNTGNLSSVPVTY
PSPGAQGVNSTASGSNSREGPGGGNGKRERYTENRGGSRHGHGESGNRHGDSPRHGDGGR
HGDGYRYPESSSSSSSSSSSSRHADGHRHGENRHGGGGGRHGESRGAGESRGASDGRNGE
SRKEACNRESKVDPKVDSKMDKVDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggaaccaaaaggggatttggctttggaggttttgct
attagtgctggaaagaaggaggaacccaaactcccacagcagtcccacagtgcctttggg
gcaaccagctcttcttctggatttggaaagtcagctccgccacagctcccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcatattttgaagatgaggaa
gaagactctagcaatgttgatttaccttacattcctgctgaaaactcgcctacccgccag
cagttccattccaagccagcagattctgacagcgatgacgatcccttggaggcgttcatg
gctgaagtggaggatcaggcggctagagacatgaagaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttac
tttcggtacatggcagagaacccaactgctggtgtggttcaggaggaagaagaagataat
ttggaatatgacagtgatggaaatcccattgcaccttccaaaaaaatcattgatcctctc
cctcccattgatcattcggagattgactatccaccatttgaaaaaaatttttacaacgag
catgaagagataaccaacctcacccctcagcagctaatagatctccgtcataagctcaat
cttcgggtctctggtgctgcacctcctagaccgggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcggaaatctgagtacacacagcccactccaatacag
tgccaaggtgtgcctgtggcattaagtggtagagacatgattggtattgccaaaacaggc
agtgggaaaactgcagcttttatctggcccatgttgattcatataatggaccagaaggaa
ttggaaccaggagatggaccaatcgcagtgatcgtgtgtcctactagggagctctgccag
cagatccatgcagaatgtaagcggtttgggaaagcgtataatcttcgatcagtcgctgta
tatggaggaggaagcatgtgggagcaggccaaggcccttcaggagggggcagagattgtt
gtgtgtaccccaggacgactaattgatcatgtgaagaagaaagctaccaatcttcaaaga
gtctcttaccttgtgtttgatgaagcagatcgcatgtttgacatgggattcgagtaccag
gtgcgatccatagcaagtcatgtccgtcctgacagacagactctcttattcagtgcaact
tttcggaaaaagattgaaaaactggccagagacatcctgatcgaccctattcgtgtggtg
cagggagacattggagaggcaaatgaagatgtgacacagattgtggaaattctccattct
gggcctagtaaatggaactggcttacccggcgtctggtagaatttacctcttcaggaagt
gttctcctgtttgttactaaaaaagccaatgctgaggagctagccaataaccttaagcag
gagggtcataatcttgggctgcttcatggggacatggatcagagtgaaagaaacaaggtc
atttcagactttaagaaaaaggacatcccagtcctggtggccacagatgttgcagcccgt
ggtctggacattccttcaattaagactgtcattaactacgacgtggcacgagacattgat
actcatactcacaggattggccgcacaggacgagcgggtgagaaaggtgtggcctatacc
ttactgacccccaaggacagcaattttgctggtgacctcgtccggaacttggaaggagcc
aatcagcatgtttccaaggaactcctcgatctggcgatgcagaatgcctggtttcggaaa
tcccgctttaaaggaggaaaaggcaaaaagctgaacattggtggaggcggtctcggctac
agggagcggcctggcctaggctcagagaacacggaccgaggcaacaacaacaacgtgatg
agcaattacgaggcctacaagccctccacaggagccatgggagatcggctgacggcaatg
aaagcagctttccagtcacagtacaagagtcactttgttgctgccagcttaagcaaccag
aaagcgggaagctctgctgctggggcaagtggatggactagtgcagggagcttgaattct
gttccaactaattcagcccaacagggccataacagtccagaaagccccattcccagtgcc
accaagggtatcccaggctttggcaatactgggaacctcagcagtgttccagtgacctac
ccttctcctggagcacagggagtcaacagtacagcttcagggagtaacagccgagaaggg
cctgggggaggcaatgggaagagagagagatacacggagaaccggggtggcagccgtcac
ggtcatggagagagtggcaatcggcatggtgacagtccacgtcatggagatggtggtcgc
catggagacggataccgctacccagaaagtagcagcagcagcagcagcagcagcagcagc
agccgtcatgctgatggtcaccgtcacggggagaacaggcatggaggaggtggcggtcga
cacggagagagccgaggtgcaggagagagccgaggtgcaagcgatggtcggaatggtgaa
agcaggaaagaggcttgtaaccgtgagagtaaggtggaccccaaggtggacagcaagatg
gacaaggtggacagcaagacagataagacagctgatggttttgctgtccccgagccaccc
aagcgcaagaaaagtcgatgggacagttag
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