Lutra lutra (Eurasian river otter): 125087521
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Entry
125087521 CDS
T08100
Name
(RefSeq) LOW QUALITY PROTEIN: eukaryotic initiation factor 4A-III-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03013
Nucleocytoplasmic transport
llv03015
mRNA surveillance pathway
llv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125087521
09122 Translation
03013 Nucleocytoplasmic transport
125087521
03015 mRNA surveillance pathway
125087521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125087521
03041 Spliceosome [BR:
llv03041
]
125087521
03009 Ribosome biogenesis [BR:
llv03009
]
125087521
03012 Translation factors [BR:
llv03012
]
125087521
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125087521
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125087521
mRNA cycle factors
Stress granule specific factors
125087521
Spliceosome [BR:
llv03041
]
Complex C
Other components
EJC/TREX
125087521
Ribosome biogenesis [BR:
llv03009
]
Eukaryotic type
90S particles
Helicases
125087521
Translation factors [BR:
llv03012
]
Eukaryotic type
Initiation factors
eIF-4
125087521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
TniB
Motif
Other DBs
NCBI-GeneID:
125087521
NCBI-ProteinID:
XP_047563877
LinkDB
All DBs
Position
16:2253945..2269310
Genome browser
AA seq
481 aa
AA seq
DB search
MAATATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEK
PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV
QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFGKCLCLKLRTLA
IKMLVLDEADEMLNKGFKEQIXDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDXYDTLTNTQAVIFCNTKRKVDWLTEKMREA
NFTVSSMHGDMPQKERESIMKEFRSGARVGKPLSTLVWARGLDVPQVSLIINYDLPNNRE
LYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNEAPQGRVEEEQVP
TEKRRPEAKPTAREVRTRDCSVRLYSNRPQITTSPEAHGGITTRRRAGTCSVGESQRNQA
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacggccacgatggcgacctcggggtcggcgcggaagcggctgctcaaagag
gaagacatgactaaagtggaattcgagaccagcgaggaggtggacgtgacgcccacgttc
gacaccatgggcctgcgggaggaccttctgcgcggcatctacgcctacggttttgagaaa
ccgtcagccatccagcagcgagccatcaagcagataattaaagggagagacgttattgct
caatcgcagtctggcacaggcaaaaccgccaccttcagcatttctgtcctccagtgtttg
gatatccaggttcgagaaacccaggctttgatcttggccccaacgagagagttagctgtg
cagatccagaagggcctgctcgctctgggggactacatgaacgtgcagtgccatgcctgc
attgggggcaccaacgtgggggaggacatcaggaagctggactacgggcagcacgttgtg
gccggcacacccgggcgtgtctttggtaagtgcctttgtctaaaattgaggacgctggcc
atcaagatgttggtgttggacgaggcggatgagatgctgaataaaggtttcaaagagcag
attntcgacgtgtacaggtacttgcccccggccacgcaggtggtactcatcagcgccacg
ctgcctcacgagatcctggagatgaccaacaagttcatgaccgaccccatccgcatcttg
gtgaagcgtgatgagttgactctagaaggcatcaagcagttttttgtggcggtggagagg
gaagagtggaaatttgacaccctgtgtgacncgtacgacacgctgaccaatactcaggcg
gtcatcttctgtaacaccaaaaggaaggttgactggctgacagagaagatgagggaagcc
aacttcacggtgtcgtccatgcacggggacatgccgcagaaggagcgcgagtccatcatg
aaggagttccggtccggcgccagggtgggcaagcccctctccacactcgtgtgggcccgg
gggctggacgtcccgcaggtgtccctcatcatcaactacgacctgcccaacaacagagag
ctgtacatccacagaatcgggcggtcgggccgctacggccgcaagggggtggccatcaac
ttcgtgaagaacgacgacatccgcatcctgagggacatcgagcagtactactccacccag
atcgacgagatgcccatgaacgaagcaccgcagggtagggtggaggaggaacaggtgccc
acggagaagagacggccggaagccaaaccaaccgcaagagaagtgaggacccgggactgc
tccgtgcggctttattcaaaccggccccagatcacaaccagccccgaggcccacggtggc
ataaccactcggaggcgagcagggacgtgcagcgtgggcgagtctcagaggaatcaggcc
gagtga
DBGET
integrated database retrieval system
