Lutra lutra (Eurasian river otter): 125088057
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Entry
125088057 CDS
T08100
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03040
Spliceosome
llv05202
Transcriptional misregulation in cancer
llv05205
Proteoglycans in cancer
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125088057
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
125088057
05205 Proteoglycans in cancer
125088057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
llv03041
]
125088057
03009 Ribosome biogenesis [BR:
llv03009
]
125088057
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125088057
Spliceosome [BR:
llv03041
]
Complex A
U1 snRNP components
U1 related factors
125088057
Complex B
125088057
Ribosome biogenesis [BR:
llv03009
]
Eukaryotic type
Pre-60S particles
Helicases
125088057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
125088057
NCBI-ProteinID:
XP_047564955
LinkDB
All DBs
Position
16:14397570..14404257
Genome browser
AA seq
614 aa
AA seq
DB search
MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
EHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
APMIGYPMPTGYSQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggttattcgagtgaccgagaccgcggccgggatcgagggtttggtgcacctcgg
tttgggggaagtagggcagggcccctgtctggaaagaaatttggaaaccctggggagaaa
ctagttaaaaagaagtggaatctcgatgagctgcccaaatttgagaagaatttttatcaa
gaacaccctgatttggctaggcgcacagcacaagaggtggagacatacagaaggagtaag
gaaattacggttagaggtcacaactgcccaaagccagttctgaatttttatgaagcaaac
ttccctgcaaatgtcatggatgtaattgcaagacagaattttactgaacccactgctatt
caggctcagggatggcccgtcgctctaagtggattggatatggttggagtagcacagact
ggatctggcaaaacattgtcttacttgctgcctgctatcgtccacattaatcatcagcca
ttcctagagagaggtgatgggcctatttgtttggtgctggcaccaactcgggaactggcc
caacaggtacagcaagtagctgctgaatactgtagagcgtgtcgattgaagtccacttgc
atctatggtggtgctcccaagggaccacagattcgtgatttggagagaggtgtggaaatt
tgtattgcaacacctggaagactgattgacttcttagaatgtgggaaaaccaatctgaga
agaactacctaccttgttcttgatgaagcagatagaatgcttgatatgggctttgaaccc
caaataaggaagattgtggatcaaataagacctgataggcaaaccctaatgtggagtgca
acttggccaaaagaagtaagacagcttgctgaagattttctgaaagattacattcatata
aacattggtgcactagaactgagtgcaaaccacaacattcttcagattgtggatgtatgt
catgatgtagaaaaggatgaaaaacttattcgtctaatggaagagatcatgagtgagaag
gagaataaaaccattgtttttgttgaaaccaaaagaagatgtgatgagcttactagaaaa
atgaggagagatgggtggcctgccatgggtatccatggtgacaagagtcaacaggagcgt
gactgggttctaaatgaattcaaacatggaaaagctcctattctgattgctacagatgtg
gcctccagagggctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaac
tcctcagaggattatattcatcgaattggaagaactgctcgcagtaccaaaacaggcaca
gcatacactttctttacacctaataacataaagcaagtgagcgaccttatctctgtgctt
cgtgaagctaatcaagcaattaatcccaagttgcttcagttggtcgaagacagaggttca
ggtcgttccaggggtagaggaggcatgaaggatgaccgtcgggacagatactctgcgggc
aaaaggggtggatttaatacctttagagacagggaaaattatgacagaggttactctagt
ctgcttaagagagattttggggcaaaaactcagaatggtgtttacagtgctgcaaattac
accaatgggagctttggaagtaattttgtgtctgctggtatacagaccagttttaggact
ggtaatccaacagggacttaccagaatggttacgatagcactcagcaatatggaagtaac
gttccaaatatgcacaatggtatgaaccaacaggcatatgcatatcctgctactgcagct
gcgcctatgattggttatccaatgccaacaggatattctcaataa
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