Lutra lutra (Eurasian river otter): 125088709
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Entry
125088709 CDS
T08100
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125088709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125088709
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
125088709
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
125088709
NCBI-ProteinID:
XP_047565994
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Position
17:27646397..27663992
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AA seq
227 aa
AA seq
DB search
MSVVPPNRSQTGWPRGVNQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV
AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG
LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ
EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtggtgccgcctaatcgctcacaaaccggctggccccggggagtcaaccagttc
ggcaacaagtacatccagcagaccaagcccctcaccctggagcgcaccatcaacctgtac
cctcttaccaattatacttttggtacaaaagagcccctctatgagaaggacagctctgtt
gcagccagatttcagcgcatgagggaggaatttgataaaattggaatgagaaggactgta
gaaggggttctgattgtacatgagcaccggctaccacatgtgttactgctacagctggga
acaactttcttcaaattacctggtggtgaacttaacccaggagaagatgaagttgaagga
ctaaaacgcttaatgacagagatactgggtcgtcaagatggtgtcctgcaagactgggtc
attgatgactgcattggtaactggtggagaccaaattttgaacctcctcagtacccgtat
attcctgcacatattacaaaacctaaggaacataagaagttgtttttggttcaacttcaa
gagaaagccttgtttgcagtccctaaaaattacaagcttgtagctgcaccattgtttgaa
ttgtatgacaatgcaccaggatatggacccatcatttctagtctccctcagcttctgagc
aggttcaattttatatacaactga
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