Lutra lutra (Eurasian river otter): 125088821
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Entry
125088821 CDS
T08100
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125088821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125088821
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125088821
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125088821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Cluap1
Motif
Other DBs
NCBI-GeneID:
125088821
NCBI-ProteinID:
XP_047566280
LinkDB
All DBs
Position
17:56730702..56743832
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AA seq
768 aa
AA seq
DB search
MADKRKLQGTGLLARGLCSHVLSVLRGPPRKPAALAGCSQPSLAPGQLHNAANANQKEKY
EADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYS
KEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQ
DRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENE
FLYDDLDLEDIPQALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSE
DDKKRGRSTDSEVSQSPAKNGCKPVHSSQHPQSPAVPPSYPPGPPPAASALSTASGNNGA
STPAAPASALGPKASPAPSHGSGTPAPYAQAVAPPAPSGSSTTQPRPPSVQPGGGGGGGG
GGGGGGSNSGGGGGAGKQNGATSYSSVVADSPAEVALSSSGGGSASSQALGPPSGPHNPP
PSTSKEPSAAASAGAGGVAPGSGNNTGGPSLLVPLPVNPPSSPTPSFSEAKAAGALLNGP
PQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDPVPALHLTERDIILSSTSAPPASAQPP
LQLSEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPT
PPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMW
FQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagcgcaaactccaaggtactggtctcctcgcccgcggcctgtgtagccac
gtgctctctgtcctccgaggccctccgcggaagcctgctgccctggcagggtgctcacag
ccttctctcgcccccggccagctccacaatgcagccaacgcgaaccagaaagaaaagtat
gaggctgacctaaagaaggagattaagaagctccaacggctgagggaccagatcaagaca
tgggtagcgtccaacgagatcaaggacaagaggcagctcatagacaaccgcaagctcatt
gagacgcaaatggaacggttcaaagttgtggagcgagagaccaagactaaagcctacagc
aaagagggcctgggtctggctcagaaggtggaccctgcccagaaggagaaggaggaggtt
ggccagtggctcacgaacaccatcgacaccctgaacatgcaggtggaccagttcgagagt
gaagtggagtcgctgtccgtgcagacacgcaagaagaagggggacaaggatcagaagcag
gaccggatcgagggcctgaagcggcacatcgagaagcaccgctaccacgtccgcatgctg
gagaccatcctgcgcatgctggacaacgactccatcctcgtggacgccatccgcaagatc
aaggatgacgtcgagtactacgtcgactcgtcccaggaccctgacttcgaggagaacgag
ttcctctacgacgacctggacctcgaggacattccacaggcgctggtcgccacctccccc
cccagccacagtcacatggaggatgagatcttcaaccagtccagcagcacacccacctct
acgacctctagctctcccatcccgcccagcccggccaactgtaccacggaaaactcagaa
gatgacaagaaaaggggacgctcgacggatagcgaagtcagccagtctccagccaaaaat
ggctgtaagcctgtccacagcagccagcaccctcagtccccggctgtgccgcccagctac
ccacctggccccccgcccgccgcctccgccctgagcactgcctccggcaacaatggggcg
tccaccccagcagcgccggcgagtgccctgggccccaaggccagcccggctcccagccac
gggtcaggcacccctgccccctacgcccaggctgtggccccgccagcccctagtgggtcc
agcaccacccagccccggccccccagtgtccagcctggtgggggagggggaggcggcgga
gggggcggcggcggcggcagtaacagcggcggaggcggaggcgctggcaagcagaacggc
gccaccagttacagctcagtggtggcggacagcccagcagaggtggctctcagcagcagt
gggggcggcagcgccagtagccaggctctgggccccccgtccggcccccacaaccctcct
cccagcacctcgaaagaacccagtgcggcagcctcagcgggggctgggggtgtggctcca
ggctcagggaacaacacggggggacccagcctcctggtgccacttcctgtgaaccctccc
agctccccgacacccagcttcagcgaggccaaggcagccggcgccctgctcaacgggcct
ccgcagttcagcaccgccccggagatcaaggccccggagcccctgagctctctcaagtcc
atggcggagcgggcagccatcagctccggcatcgaggaccccgtgccagcgctgcacctg
actgagcgagacatcatcctgagcagcacgtctgccccaccggcttccgcgcaaccaccc
ctgcagctgtcggaggtgaacatcccactgtccctgggcgtgtgtccgctggggcctgtg
cccctcaccaaggagcagctgtaccagcaggccatggaggaggccgcctggcaccacatg
cctcacccctcagactcagagcgcatccggcagtacctcccccggaacccctgcccgacg
cccccctaccaccaccagatgccacccccacactcggacaccgtggagttctaccagcgc
ctgtcaacggagacgctcttcttcatcttctactatctggagggcacgaaggcgcagtac
ctggcagccaaggccctgaagaagcagtcgtggcgattccacaccaagtacatgatgtgg
ttccagaggcacgaggagccgaagaccatcacagacgagttcgagcagggcacctacatc
tactttgactacgagaagtggggccagcggaagaaggaaggcttcacctttgagtaccgc
tacctggaggaccgggacctccagtga
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