KEGG   Lutra lutra (Eurasian river otter): 125089326
Entry
125089326         CDS       T08100                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
llv  Lutra lutra (Eurasian river otter)
Pathway
llv03030  DNA replication
llv03410  Base excision repair
llv03420  Nucleotide excision repair
llv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:llv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    125089326
   03410 Base excision repair
    125089326
   03420 Nucleotide excision repair
    125089326
   03430 Mismatch repair
    125089326
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:llv03032]
    125089326
   03400 DNA repair and recombination proteins [BR:llv03400]
    125089326
Enzymes [BR:llv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     125089326
    6.5.1.6  DNA ligase (ATP or NAD+)
     125089326
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     125089326
DNA replication proteins [BR:llv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    125089326
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     125089326
DNA repair and recombination proteins [BR:llv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     125089326
   NER (nucleotide excision repair)
    Other NER factors
     125089326
   MMR (mismatch excision repair)
    Other MMR factors
     125089326
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR
Other DBs
NCBI-GeneID: 125089326
NCBI-ProteinID: XP_047567438
LinkDB
Position
17:complement(51600734..51644668)
AA seq 918 aa
MQRSIMSFFYPKKEGKVKKPEKETSNSVRETEPPPKVALKERNGEVPESDSPVKRPGRKV
ARVLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPVTFPESSPSLSGTSPVDVSLAGIPK
RRTARKQLPKRTIQDVLEEQAKDEDREAKRKKEKEAETPPESLTEPEVTQEKEAEEEDQP
VTSPEHPETSAESPPDSASEPEVAGKPEAREEDPARPPPRAPKTVSSFFAPRKPATKKEG
KEEGPGTPRQEEAKGPPDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSA
RLRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGR
QLESVKAEAAEKGDVGLVAESSRSTQRLVLPPPALTAAGVFTKFRDIARLAGSASTAKKM
DVIKGLFVACRHSEARYIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPGIVDAG
KGRTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGVPLKPML
AHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQVGGSHVLEGGEVKIFSRNQEDNTSKYPDI
ISRIPKIKLPSVTSFLMDTEAXAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFD
LIYLNGESLVCKPLSRRRQLLRENFVQTEGEFVFATSLDTKDTEQIAKFLEPSVKDSCEG
LMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA
AYDEESEELQAICKLGTGFSDEELEEHHHRLQALVLPSPRPYVRVDGAVAPDHWLDPSAV
WEVKCADLSLSPIYPAARGLVDGEKGISLRFPRFIRVREDKKPEEATTSAQVASLYKKQS
QIQNQQGADLDSDPEDFY
NT seq 2757 nt   +upstreamnt  +downstreamnt
atgcagcgaagtatcatgtcatttttctaccccaagaaggagggcaaagtgaaaaagcca
gagaaggagacctccaacagcgtcagagagacggagccgcctccaaaggtggcactgaag
gagcggaatggagaggtgcctgagagcgattctccagtgaagaggccggggcggaaggtg
gcccgggtcctgggcagtgaaggggaggaggaggacgaggccctcacaccctccaaaggc
cagaagcctgccccgggctctccacaagtctcccctcccagccctgtcacatttcccgag
agcagcccttccctctccggcacctctcctgtggacgtctccctagcagggatcccgaag
cggcggacggctcggaagcagcttcctaagcggacaatacaggatgtcctggaggagcag
gccaaggacgaggacagagaggccaagaggaagaaggagaaagaagctgagaccccacca
gaaagcctcacagagcctgaagtgacccaagagaaagaagcagaggaagaggaccagccc
gtgacgtcccctgagcacccagagacctcggcagaatccccgccggacagcgcctcggag
cctgaggtggctgggaagccggaggctcgggaggaggacccggccaggccaccccccaga
gctcccaaaacggtcagcagcttctttgccccccggaaaccggcaaccaagaaagaaggg
aaagaagagggacctggcactccaagacaggaggaggccaagggacccccggaccccccc
agctacaatcctgccaagaacaactaccatcccatcgacgacgcatgctggaagccaggc
cagaaggttccttacctggctgtggcccggacctttgagaagattgaggaagtttctgct
cggctccggatggtagagacgctgagcaacttgctgcgttctgtggtggccctgtcccct
ccagacctcctccccatcctctacctcagcctcaaccgcctcgggccgccccagcagggc
ctggagcttggcgttggtgacggcgtcctcctcaaggcagtggcccaggccacggggcgg
cagctggagtctgtcaaggccgaggcggccgagaagggcgacgtggggctggtggcggag
agcagccgcagcacccagagactcgtgctgcccccgcccgctctcaccgccgccggagtc
ttcaccaagttccgagacatcgcccggctggccggcagcgcttccacagccaagaagatg
gacgtcatcaaaggcctatttgtcgcctgccgccactcagaagcccgatacatcgccaga
gccctgagcggacggctgcgcctcgggctagcagagcaatcggtgctggccgccctcgcc
caggccgtgagcctcacgccccctggccaagaattccccccgggcattgtggatgctggg
aagggcaggacagcagaggcccgaaagacatggctggaggagcagggcatgatcctgaag
cagacgttctgcgaggtgcctgacctggaccggatcatccctgtcctgctggagcacggc
ctggagcgcctcccagagcattgcaagctgagcccaggggttcccctgaaaccaatgctg
gcacaccccacccgcggagtcagcgaggtcctaaaacgcttcgaggaggcagctttcacc
tgcgagtacaaatacgatgggcagagggcacaggtagggggatcccatgtcctagaaggc
ggggaggtgaagatcttcagcaggaatcaggaagacaataccagcaagtacccggacatc
atcagccgcatccccaagattaaactcccgtcagtcacatccttcctcatggacacagaa
gctntggcttgggacagggaaaagaagcagatccagccattccaagtgctcaccacccgc
aaacgcaaggaggtggacgcagcagaaatccaagtgcaggtgtgtctgtatgccttcgac
ctcatctacctcaatggagagtccctggtgtgcaagccgctttcccgacgccggcagctg
ctccgggagaacttcgtgcagacggagggcgaatttgtcttcgccacctccctggacacc
aaggacacggagcagatcgccaagttcttggagccgtctgtgaaagactcctgcgagggg
ctgatggtgaaaaccctggacgtcgacgccacctacgagatcgccaagaggtcacacaac
tggctcaagctgaagaaggactacctcgatggcgtgggcgacaccctggacctcgtggtg
attggcgcctacctgggccgtggcaagcgggccggccgctacgggggcttcctgctggcc
gcctacgacgaggagagcgaggagctccaggccatatgcaagctcggaaccggcttcagc
gacgaggagctggaggagcaccaccacaggctccaggccctggtgctgcccagcccgcgc
ccctacgtccgggtggacggcgccgtggcccctgaccactggctggaccccagcgccgtg
tgggaggtgaaatgcgctgacctgtccctgtcccccatctaccccgctgcccggggcctg
gtggatggtgagaaggggatctcccttcgctttcctcggtttatccgtgtccgtgaagac
aagaagccagaggaggccaccaccagcgcccaggtggcttcactgtacaagaagcagagt
cagattcagaatcagcagggcgcagatctggactccgacccggaagatttctactag

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