Lutra lutra (Eurasian river otter): 125090359
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Entry
125090359 CDS
T08100
Name
(RefSeq) mismatch repair endonuclease PMS2-like isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03430
Mismatch repair
llv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125090359
03460 Fanconi anemia pathway
125090359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llv03400
]
125090359
DNA repair and recombination proteins [BR:
llv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
125090359
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
UfSP_MPN_N
Motif
Other DBs
NCBI-GeneID:
125090359
NCBI-ProteinID:
XP_047568917
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Position
18:complement(35386347..35414331)
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AA seq
850 aa
AA seq
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MELAEGQSTELAKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSVDAGATTIDLRLKD
YGVALIEVSDNGCGVEENNFEGLTLKHHTSKIQDFADLTQVETFGFRGEALSSLCALSDV
TISTCHTSAKVGTRLVFDHNGKIVQKTHHPRPRGTTVSVQQLFHTLPVRHKEFQRNIKKE
YAKMVQVLHAYCIISAGVRISCSNQVGHGRRQPVVCTSGSCSIKENIASVFGQKQLQSLI
PFVQLPPSDSVCEEFGLSQADALRTLFHISGFISYCAHGVGRSSTDRQFFFINGRPCDPA
KVSRLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLV
GMFDNDVNKLSVSQQPLLDVEGHLIKTHLAETDKHQPEKQDGAASLRTGGEEKRAVTISR
LRETFSLQHTMESRPQGPKSPELLRMSPRQKRQERLPEASDPPCTQRPISGTDSCEPQEE
VMCSDKGPCDRRDRGDMEQDPGHSCLPADQEEGLGAPETGRHTSRESPVTDCHSADPKGH
LDQEDGDRTRRVLSGPADLSSSHAKRFKKDGIPSGSEALQGPVKTQTSSAVQVDVAVKIH
KKIVPLAFSMRSLAHRIKRLQQQEQQREAAQKCRKFRAKICPGENQAAEDELRKEISKTM
FAEMEIIGQFNLGFIITKLNADIFIVDQHATDEKYNFEMLQQHTALQGQRLIAPQTLNLT
AVNEAVLIENLEIFRKNGFDFVIDEEAPVTERAKLISLPMSKNWTFGPQDIDELIFMLSD
SPGVMCRPSRVRQMFASRACRKSVMIGTALSTSEMKKLITHMGEMDHPWNCPHGRPTMRH
IANLDVLSQS
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggagttagcggaagggcagagcacagaacttgctaaggccatcaaacctatcgatcgg
aagtcagtccatcagatttgttctggacaagtagtactgagtttaagtactgctgtgaag
gagttggttgaaaatagcgtggatgctggagccactactattgatcttaggcttaaagac
tatggggtggcgctcattgaagtttcagacaatggatgcggggtagaagagaacaacttt
gaaggcttaactctgaaacatcacacttctaagattcaagactttgctgacctaactcag
gttgaaactttcggctttcggggagaagccctgagctcactttgtgcactgagcgatgtg
actatttctacctgccacacatccgcgaaggtcgggactcgactggtgtttgatcacaat
gggaagatcgtccagaaaacccaccacccacgccccagagggacgactgtcagtgtgcag
cagctgtttcacacgcttcctgtacgtcataaggagtttcaaaggaatattaaaaaggag
tacgccaaaatggtccaggtcttgcatgcgtactgtatcatttcggcgggcgtccgcatc
agttgcagcaatcaggtgggacacgggaggcggcagccggtggtctgcaccagtgggagc
tgcagcataaaggaaaatattgcctcggtgtttgggcagaaacagctgcaaagcctcatt
ccctttgttcagctgccccctagtgactccgtttgtgaagagttcgggctgagccaagct
gatgccctccgcaccctctttcacatctcaggcttcatctcttactgtgctcatggtgtt
ggaagaagttcaacagacagacagtttttcttcatcaatgggcggccttgtgacccagca
aaggtctccaggctcgtgaacgaggtctatcacatgtataatcgacatcagtatccattt
gtcgttcttaacatttctgttgattcagaatgtgttgatatcaacgtcactccagataaa
aggcaaattttactgcaagaagagaagcttctgttggcagttttaaagacgtctttggta
ggaatgtttgacaacgacgtcaacaaactcagtgtctctcagcagccattgttggatgtg
gaaggtcacttaataaaaacgcacttggcagaaacagacaagcatcagccagaaaagcag
gatggtgccgcttcgttaagaaccggaggagaagagaaaagggcagtgaccatttccaga
ctgagagagaccttctctcttcagcacacaatggagagcaggcctcagggcccgaagagc
cctgaactgctgcggatgtccccaagacagaagagacaggaacggcttcctgaagcttcg
gaccccccctgcacccagaggcccatctctggcacagactcatgtgaaccccaggaggag
gtgatgtgttcagataagggcccctgtgaccgcagggacagaggggacatggagcaggac
cctgggcacagctgcctgccagccgaccaggaggaagggcttggagccccagaaacaggc
cgtcacaccagcagggagtcccctgtgactgactgtcactctgcagaccccaaaggccat
ctcgaccaagaggatggtgatcggacacgtagagtcttgtctggacccgccgacctgtcc
tcctcacacgcaaagcgttttaagaaagacggaatcccttccggttctgaagctctccaa
gggccagtgaagactcagacctcgtcagcggttcaggttgacgtggcggttaaaatccac
aagaaaatcgtgcccctggccttttctatgcgctctttagctcatcgaataaagcggtta
cagcagcaagaacagcagagagaagcagcacagaagtgtagaaagttcagggccaagatt
tgccccggagaaaaccaggccgcagaggatgagctgagaaaggagataagtaaaacgatg
ttcgccgagatggagatcattggtcagtttaacctgggatttataatcaccaaactgaac
gccgacatcttcatagtggaccagcatgccacggacgagaagtacaactttgagatgcta
cagcaacacactgccctccagggtcagaggctcatagcaccgcagactctcaacttaacg
gctgtcaatgaagctgttctcatagaaaacctggaaatattccgaaagaacggctttgat
tttgtcatcgacgaagaggctccagtcactgaaagggctaaattgatttccttgccaatg
agtaaaaactggaccttcggaccccaggacatcgacgaactgatctttatgctgagcgac
agccccggagtgatgtgccggccttcccgagtcaggcaaatgtttgcctccagagcctgt
cggaagtctgtgatgattggaactgcccttagcacaagtgagatgaagaaactcattacc
cacatgggcgagatggaccacccctggaactgtccccacggaaggccaaccatgagacac
attgccaacctggatgtcctttctcaaagctga
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