Lutra lutra (Eurasian river otter): 125090679
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Entry
125090679 CDS
T08100
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125090679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125090679
Enzymes [BR:
llv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125090679
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125090679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
RRM_1
NCBP3
Motif
Other DBs
NCBI-GeneID:
125090679
NCBI-ProteinID:
XP_047569536
LinkDB
All DBs
Position
18:complement(11636260..11796747)
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AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLNLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKERYIV
ISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSAKSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKHEEKQIKRKWTEDTWQEVERKRLK
TQSISYTLQNHYYHTNSLTATGTVEKRSLSPSPAEADLEARVSGEISDAELDQTESCAEP
VSEGRKKAKKLKRMKKDLSPAGNIPNSPAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttcggta
actgcattgacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacgtttaagtatgaccacacagat
tcaaagtatataacaaagtcattcaacttctacgtgttcccaaaacccttcaatagatcc
tcgccagatgtcaagtttgtttgtcagagttcaagcattgactttctagcaagccaagga
tttgattttaataaagttttccgcaatggaattccgtatttaaatcaggaagaagaaagg
cagttaagagagcagtatgatgaaaaacgtctgcagtccaatggcgcaggagcgctgtct
tacgtatctccaaacacttccaaatgtcctgtgacgattcctgaggaccagaagaagttc
atcgaccaagtggtagagaaaatagaagatttactacaaagtgaagaaaacaagaacttg
aatttagagccatgtactgggttccaaagaaaactgatttatcagactttgagctggaag
tatcccaaaggcatccacgttgacactttagaaactgaaaagaaagagcgctacatcgtc
atcagcaaagtagatgaagaagagcgtaagaggagggagcagcagaaactcgctaaggaa
caggaagaactgaatgatgctgtgggattttctagagtcatccacgccattgccaattcg
ggaaagctcgttattggacacaacatgctcttggatgtcatgcacacggttcatcagttc
tattgccctctgcctgcggacctaaatgagtttaaagagatgacaacatgtgttttcccc
agactcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatctctcgcagaattagaaaagcggttaaaagagacgcctttcaaccctcctaaagtt
gaaagtgcagaaggttttccaagttacgacacagctacggagcagctccacgaggctggc
tatgatgcttatatcacagggctgtgcttcatctccatggcgaactacctaggttctttt
cttagccctccaaaaattcatgtgtctgccaaatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtcatggatatcccctatctaaacttggaaggcccagatttg
cagccgaaacgggatcatgttctccatgtgaccttccccaaagagtggaaaaccagcgac
ctttaccagcttttcagtgcctttggtaacattcagatatcctggattgatgacacatca
gcctttgtttctctcagccagcccgaacaagtacagattgctgtcaataccagcaaatat
gcagaaagctatcggatccagacctatgctgaatatgtagggaaaaaacacgaggagaag
cagatcaagaggaagtggacagaagatacctggcaggaggttgagagaaaacgattaaag
actcagtccatatcctacactctgcagaatcactactaccacaccaacagtcttacagcc
actggcacagtagaaaagagaagtctgagtcctagcccagcagaagctgacttggaggcc
agagtatcaggggagatttctgacgccgagctcgaccagacggagtcctgtgcagaaccc
gtctccgagggaaggaaaaaggccaagaaattaaaaagaatgaagaaggacctttcacca
gcaggaaacatccccaacagcccggccaagctcttcgaagtccccgacacgtggtaa
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