Lutra lutra (Eurasian river otter): 125091008
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Entry
125091008 CDS
T08100
Name
(RefSeq) LOW QUALITY PROTEIN: structure-specific endonuclease subunit SLX4-like
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
125091008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
llv04121
]
125091008
03400 DNA repair and recombination proteins [BR:
llv03400
]
125091008
Ubiquitin system [BR:
llv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
125091008
DNA repair and recombination proteins [BR:
llv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
125091008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_4
YlbE
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
125091008
NCBI-ProteinID:
XP_047570313
LinkDB
All DBs
Position
18:complement(2859427..2880257)
Genome browser
AA seq
1767 aa
AA seq
DB search
MMDESDDDFKELCASFLQRVKKNITKEVSGERKTQKTSSSTQISKPKRTKPTATKDKALQ
GPREKKTRSGSQAPRTKKQGAPKWQRSEPAPPENGGGSVLASAALQEGVQSTQTEASLDS
SSQPAPSCLTVMAPSPSKPRTAELVLQRMQQFKRADPKRLLRTSEGRCLQATLEEDAPAG
SPEEMTAGNGPGPRLPATESDAAAALALRQEFGEQRAPAQEADLEETGLFCQICQKNLSN
MNVTRREQHVNRCLDEAEKALTPSTPRIPECPICGKPFLSPKSRMSHLKQCAVKMEVGPQ
LLLQAVRLQTAEPDEACGTPASSFRNHIGGLKRKGAPKRKELQKKQKVNEPEAPSEDLLV
AMALSRSEMERNAVPSVLRLESAFSERIRVGAEKKSRKRKVPVCPPPLLVQDLETRGRQT
EDRVAQLFAEEMELSSTPPLPASRILKEEREKAGRHLQPPGGKQNFLWEGSALTGAWVLE
DFYTASLVPPMVPQRPSKGRSQEPTLPPVPPNQPELGMRTPPAXPSAPPVGRGPRSPSPS
ASQREHQALQDLVDLAREGLSATPWPCSGGLAHSGGATGTDMSPTGLPPTGFVLPPEEKL
LDRGSHASLTLGLLLADLRAMVDNPQLSDVQLQTDRGDVLYAHKFVLYARCPLLMQYVNS
EGFFVVEDGDPRSQRALLSDVSTEATRALLHYLYTADPGVPPRLVPDLSALAHRFGVSEL
VLLCEQAPDVSDSEDGPWKQKEDKDCESRTENFQELLRSVWVDEEEEAEALLKSESLEED
REKVNEAEMEEIYEFAATQRKLLRGEGAPEIKEETDQFGDNGPVSAQILASDQVSEQSEN
AEQMESSGQERGEXPAKQRSVRQSTPLPLQGQCVDEEKAGAPEEALGLSGSPPPSGGHRE
GRKEGRFWCSADAPAARLRSSTPRRCRGLSQIVSHLQEANGTVLGPRAGSPCAPAPRQTP
PWSPCLSQLPGGQSPGRSHLRPCLRGESPSPGPQPQGRASRVASRDSPAKQRRSRSLLTI
LQDPGLQKGEDRGSLLECRNKGVLTSPEKSPSIDLTQSKPARLSSRSQNTPSSKNREDEI
ILLLDSDEELELEQSKIKSGFNGPLEERKVLEVSPKSSELFSVIDVDADQEILQSPARRE
ASLQGGEERPAGNRGSVGGRGTPWLSCDPESSPEEDSTTDTSWLVPATPLAHRSRDSSSQ
TQVTSLRPGASVDLMAQVKPWAPLESRSGPEAASMSSVVTTPMSSSCLVPTYAGIPNSQS
PSRRPHPGCHQHGSPAPCPVSVGLTDLTRQSQKHCPPGPGLLSQAIASEVVEVEDSEDEQ
EAASRRANSSPLLNGDPPIPVDDCHWHVEPLSPIPIDRLNLERTGPLSPGSPGSKSGEAP
DGSGCHSPALPATTPTCGSYTGQRKSQEKFPRAGSPGSRRPSFLSSALWDDWDGEGQKSP
ELLPPAQTLSADVAAQSSEALETPKGANRKNLPPKVPITPMPRYSIMETPVLKKELDRFG
VRPLPKRQMVLKLKEIFQYTHQTLESDSENESQSSQGPPQAPHSQTHASRTSKAPRAAGR
ARLEAASGPLPQTSKGSTKTKGPQHQKKQPGGSIPPMSSSPAREGPPDPDGDAQLPASQE
SVASSVDSSDSSFSSLSSSSCEFGAAFESAEDDEGEEEGSASQAAVPAAATEEAVRHYIR
SRPALYRKVLLYQPFELAELQAELKQHGIRVATQKLLDFLDAHCITFTTAAARKERLRGK
RWQPAGKKRGRAARPVRPSPSQAVSGL
NT seq
5304 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgagtcagacgatgattttaaggaactctgcgccagctttctccaaagggtg
aaaaagaacatcaccaaggaagtgtcgggggaaaggaagacacaaaagacctccagcagc
actcagataagcaaaccgaaaaggaccaaaccaactgccaccaaggacaaagcccttcaa
ggccccagggagaagaagactcggtctggcagccaggccccaaggactaaaaagcaaggg
gcacccaagtggcagaggagtgaacccgctccccctgagaatggagggggaagtgtgctt
gcctctgctgcgctccaggagggtgtgcagagcacccagacagaggcttctctggacagc
agctcccagccggctccttcctgtctgacggtgatggctccgagtccctccaaaccccgg
acggcagagctggtcctccagcgaatgcagcagttcaagagagcggaccccaagcgtttg
ctgcgcacttcggaagggcgctgtctgcaggctacactggaagaagatgccccagcaggc
tctccagaggagatgacggcggggaatgggcctgggcccaggcttcccgccaccgagagc
gatgctgcagcggccttggccctgcggcaagagtttggggagcagcgagcaccggctcag
gaggctgacctggaggagacagggttgttctgccagatctgtcaaaagaacctctcaaac
atgaatgtgacacgaagggaacagcacgtgaaccggtgcttggatgaggctgaaaaggca
ctgacaccctccacacctcggatccccgaatgcccaatttgtggcaagccctttctcagc
ccgaagagcagaatgagccacttgaagcagtgcgcggtgaagatggaggtcggcccgcag
ctcctgctccaggccgtgcggctgcagacagccgagcctgacgaggcctgtggcacaccg
gcgtcgagcttcaggaatcacattggaggtctgaagcggaagggagcccccaagaggaag
gagctacagaagaaacagaaggtcaatgagcccgaggcgccgtctgaggacctgctggtg
gccatggctctgtcccggtctgagatggagcggaatgctgtgccctcggtgctcagactg
gaaagcgctttctccgagaggataagagtgggggcagaaaagaagagtcgtaagaggaaa
gtgcctgtatgccctcccccgttgttagtccaggacctggagaccagagggaggcagaca
gaggaccgagtggcccagctcttcgcagaggagatggagctgtccagcacgccgccactg
cccgcgagcaggatcctgaaggaagagcgggagaaggccggacggcatctacagccgcct
ggggggaagcagaactttttgtgggagggcagcgccctgactggggcctgggttctggaa
gacttctacaccgcaagcctggtccctcccatggtgccccagcggccctcgaagggtcgt
agccaggagcccacgctgccgccggtgccgcctaatcagccagagctggggatgcgaacg
ccacctgctnctcccagtgccccgcctgtgggccgtggccccaggagcccatcaccctcc
gccagccagagagagcaccaggccttgcaggatcttgtggacctggcgagagaggggctg
agtgccaccccgtggccctgcagtgggggcctggcacactcaggaggggccacagggacg
gacatgtcgcccaccggccttccaccgactggttttgtcctgccacctgaggagaagctc
ctggacaggggcagccacgcttcgctcaccctcggtttgctgctggccgacctcagagcc
atggtcgataacccacagctgagtgacgtgcagcttcagacggaccgtggggacgtgctt
tacgcccacaagttcgtgctgtatgcccgatgcccccttctcatgcagtatgtgaacagc
gaaggcttcttcgttgtggaggacggcgatccacggagccagcgtgcgctgctgagtgac
gtgagcaccgaggccacccgcgcgctcctgcactacctctataccgcggaccccggcgtg
cctccccggctggtccctgacctcagcgctctggcccacaggtttggggttagcgagctt
gttcttctgtgcgaacaagcgcctgacgtgagcgattcggaggacggaccgtggaagcag
aaggaagacaaggattgtgaaagccgcacggagaacttccaagaactcttgaggtccgtg
tgggtagatgaggaggaagaagcggaggctttgttgaaatctgagagccttgaagaagac
agagaaaaagtgaatgaagcagaaatggaagaaatttatgaatttgcagccactcaacga
aagctgctccggggggaaggagctccagagatcaaggaagaaactgaccagtttggggac
aatggtccagtgtctgctcaaatcctagcaagtgaccaggtcagcgagcagtcagaaaat
gcagaacagatggaatcatctggtcaggaaagaggagaangcccagccaaacagaggagc
gtgagacagtccacgcccctgccactccagggtcagtgtgtggacgaggagaaagcaggg
gcgccagaggaagcactgggtctttctggctcccctcccccttctgggggccatagggaa
gggagaaaggaaggcaggttctggtgctcagctgatgctcctgcggcccggctgcgctca
tcaactcccagaagatgccgtgggctgtcccagatcgtgagccatctccaggaagccaat
ggcactgtcttgggaccgagggcggggagcccttgtgcccctgctccccggcagacaccc
ccgtggagcccgtgcctgtcacagctccctggaggccagagtcctggccggtcacacctt
cgtccttgtctcaggggcgaatcaccctcgccagggccccagccgcagggcagagcttcc
agggtggcctcccgggactccccagcaaagcagaggaggagcaggagcctcctcacgata
cttcaagatccaggcctccagaagggcgaggaccgtggttccttgttggaatgcagaaat
aaaggggttctgacctccccagagaagtctccatccatcgacctaacgcagtcaaaacct
gcccgtttgagttccagatctcagaacactccatccagcaagaacagagaagatgagatt
attcttttattggattcagatgaagaactggagctagaacaaagcaaaataaagtcaggt
tttaatggtcccctggaagaaaggaaagttctagaagttagccccaagtcttctgagctg
ttttctgtcatcgatgttgatgcagatcaggaaattctccaaagcccagcgagaagagag
gcttccctgcagggcggggaggagaggccagcagggaaccggggttctgtggggggcaga
gggaccccttggctgtcatgtgaccccgagagcagccccgaagaggacagcaccacagat
acctcatggctcgtgcccgctacgccactggcccacagaagccgcgactcctcctcgcag
acacaggtaacaagcctcaggcccggggcttcggtggacctcatggctcaggtcaagccc
tgggccccattagaaagcaggagcgggcccgaagccgcaagtatgtcttcggtcgtcacc
accccgatgtcatcgtcatgcctggtccccacctatgcaggcatccccaacagccagagc
ccttctagaaggccccaccccgggtgccaccagcacggctctccggctccctgtcccgtc
tctgttggcctcactgatctcaccaggcagtcccagaagcactgccccccggggcctggc
ctcctgagtcaggccatcgccagcgaggtggtggaggtggaggacagcgaggatgagcag
gaggcggcctcgcggcgggcgaacagcagccccctgctgaacggcgaccctccgattcca
gtggatgactgccactggcacgtggagcccctctcgccgattcccattgaccgcctgaac
ctcgagcggaccggccccctgagccccggcagtccgggcagtaagtctggggaggcccca
gacggcagtggctgccactccccagccctcccggccaccacccctacctgcggaagctac
actggccagaggaagtctcaagagaagttccctcgggccggctcgcctgggagccgcagg
ccgagctttctgagctccgctctgtgggacgattgggatggagaaggccagaagtctcca
gagctgcttcctccagcccagacactgagcgctgatgttgctgctcagagctcagaagcg
ctggagacaccaaaaggtgctaatcggaagaacttgcccccgaaagtgcccataacgccc
atgccaaggtactccatcatggagactccggtactgaagaaagaactggataggtttggc
gtccgccctctacccaaacgccagatggtcctaaagctgaaggagatattccagtacact
caccagactctggagtccgactcagagaacgagagtcagtcttcccaggggcccccgcag
gctccgcacagccagacccacgccagcaggacctccaaggctcccagggctgctggccgt
gcccgactggaggccgcttctggtcctcttccccaaacgtccaagggctccactaagacc
aagggcccccaacatcagaagaaacagcctggtggaagcatccctcccatgagctcctca
ccggccagggaggggcctccagaccctgatggggacgcccagctcccggcctcccaggaa
tccgtggcctcctctgtggacagcagtgacagctcctttagctcactaagctcttcttcc
tgtgagtttggagcggcctttgagtctgcagaggacgacgagggcgaagaggagggcagc
gcgtcccaggcggccgtccccgcagcagccacggaggaggccgtgaggcactacatccgc
tccaggccggccctctaccgcaaggtcctgctgtaccagcccttcgagctggccgagctg
caggccgagctgaagcagcacggcatccgcgtggccacccagaagctgctggacttcctg
gacgcccactgcatcaccttcaccaccgccgcggcccggaaggagaggctccgcgggaag
aggtggcagccggcgggcaagaagaggggccgagccgccaggccggtccgtccctccccg
tcacaggccgtcagcggcctgtga
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integrated database retrieval system
