Lutra lutra (Eurasian river otter): 125091301
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Entry
125091301 CDS
T08100
Name
(RefSeq) polyadenylate-binding protein 4-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03015
mRNA surveillance pathway
llv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125091301
09123 Folding, sorting and degradation
03018 RNA degradation
125091301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125091301
03041 Spliceosome [BR:
llv03041
]
125091301
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125091301
mRNA cycle factors
Stress granule specific factors
125091301
Spliceosome [BR:
llv03041
]
Complex C
Other components
Complex C specific factors
125091301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
125091301
NCBI-ProteinID:
XP_047570759
LinkDB
All DBs
Position
X:complement(1394498..1397565)
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AA seq
661 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELAAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQTLAPRAAVAAAAAPRAVAPY
KYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMH
SNLAGKITGMLLEIANSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAAT
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctctacgtgggtgacctgcactcg
gacgtcaccgaagccatgctgtatgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgacatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggctgacgccgagcgggccttggataccatgaactttgatgtgattaagggaaag
ccaatccgtatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaat
gtcttcatcaagaatctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacattctgtcttgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacgcaagaggctgctgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gctgagcttgcagccaaagccaaggagttcaccaatgtttatatcaaaaactttggggaa
gaggtagatgatgagagtctgaaggagctgtttagtcagttcggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggccgtggaagagatgaatggaaaagaaatcagtgggaaagtg
atttttgtaggccgtgcacagaagaaagtggaacggcaggccgagttaaagcggaaattt
gagcagctaaaacaagagagaattagtcggtatcagggggtgaatctctacattaagaac
ttggatgataccattgatgatgagaagttaaggaaagagttttctccttttggatcaatc
accagtgctaaggtaatgttggaggatgggagaagcaaagggtttggctttgtctgcttc
tcatctcctgaagaggcgaccaaagccgtcactgagatgaatggacgcatcgtgggctcc
aagccactatatgttgctctggcccagaggaaggaagagagaaaggctcacctgaccaac
cagtacatgcagcgggtggctggaatgcgagcactcccggccaacgccatcttaaatcag
ttccagcctgcagctggaggttactttgtgccggcagttccacaggctcagggaagacct
ccgtattatacacctaaccagttagcacagatgaggcctaatccccgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatccgccagtctgggcctcgtccc
gctcttcgccatctggctccaactggtaatgctccggcctctcgtggcctccctactacc
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggc
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcccacagctgtgcag
accttagcacctcgtgctgccgtcgctgctgctgctgctccgcgggctgtcgcaccttac
aaatacgcctccagcgtccgcagccctcaccccgccatccagcctctgcaggcaccgcag
cctgcggtccacgtgcagggccaggagcccctgactgcctccatgctggccgcagcgccc
ccgcaagagcaaaagcagatgctgggagaacgtttgttcccactcatccaaaccatgcat
tcaaacctggctgggaaaatcacgggcatgctgctggagatcgccaactctgagctgctg
cacatgctggagtcccccgagtcgctccgctccaaggtggatgaagccgtggcggttcta
caggctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgctgctgctacc
tcttag
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