Lutra lutra (Eurasian river otter): 125091570
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Entry
125091570 CDS
T08100
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04151
PI3K-Akt signaling pathway
llv04382
Cornified envelope formation
llv04510
Focal adhesion
llv04512
ECM-receptor interaction
llv04820
Cytoskeleton in muscle cells
llv04926
Relaxin signaling pathway
llv04933
AGE-RAGE signaling pathway in diabetic complications
llv04974
Protein digestion and absorption
llv05146
Amoebiasis
llv05165
Human papillomavirus infection
llv05200
Pathways in cancer
llv05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125091570
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125091570
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125091570
09142 Cell motility
04820 Cytoskeleton in muscle cells
125091570
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
125091570
09154 Digestive system
04974 Protein digestion and absorption
125091570
09158 Development and regeneration
04382 Cornified envelope formation
125091570
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
125091570
09162 Cancer: specific types
05222 Small cell lung cancer
125091570
09172 Infectious disease: viral
05165 Human papillomavirus infection
125091570
09174 Infectious disease: parasitic
05146 Amoebiasis
125091570
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
125091570
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
llv04147
]
125091570
00536 Glycosaminoglycan binding proteins [BR:
llv00536
]
125091570
Exosome [BR:
llv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125091570
Glycosaminoglycan binding proteins [BR:
llv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125091570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125091570
NCBI-ProteinID:
XP_047571141
LinkDB
All DBs
Position
X:37033970..37308430
Genome browser
AA seq
1706 aa
AA seq
DB search
MHPGLWLLLVTLCLTEELVGAGEKKSYGKPCGGQDCSGGCKCFPEKGSRGRPGPIGIQGP
VGPQGFAGPSGLAGLKGERGSPGPLGPYGPKGDKGPMGVPGFLGINGIPGQPGQPGPRGP
PGLDGCNGTQGAIGYPGPEGYPGLLGPPGFPGRKGSKGEPVFDQSTFKGMKGEPGLPGLD
GITGPPGTPGSPGAVGPMGPPGLQGPPGPPGFPGPDGNMGLGFQGEKGVKGDVGLPGPAG
PPPSTGELEFMGFPKGKKGSKGEPGLPGFPGISGPPGLPGFGTAGEKGEKGIPGFPGLRG
PMGLEGFQGPPGSQGKKGASGFPGLNGFPGMKGEKGAIGLPGPDVFIDTDGAVISGYPGD
PGMPGLPGLKGDEGIQGQPGPSGVPGLPALPGIPGALGPQGVPGLKGDQGNRGRTTVGTA
GPPGRDGLPGLPGLPGPPGPTFETGTLQNAEPGFPGLRGEQGPKGNPGLKGMKGDLGFCA
CDGGIPNTGPPGDPGLPGPPGLIGLPGIKGIRGDPGSGGAQGPSGSPGLFGPHGPVGPKG
EKGEPTLSSGSGVPGEQGDPGPQGLPGETGAPGKDGIPGLPGLPGLPGDGGQGFPGEKGF
PGLPGEKGHSGPIGPPGIGLPGSPGPRGLPGDQGINGLPGQQGLPGLPGDCCCRENIGKG
DLVTEGGITLPCIIPGSYGPSGLPGVPGFPGPKGARGLPGTPGQPGLRGNKGEPGSPGLA
HLPELPGFPGPRGEKGLPGFPGLPGKDGLPGKLGSPGLPGSKGAPGDIFGAEDGAPGEQG
LQGLPGDRGFPGDSGLPGPKGLLGKSGLLGPKGERGSPGMPGHVGQPGPPGPQGLFGVKG
KPGLPGAPGFPGPSGRPGKKGVRGESGPPSSSGKRGLPGLKGFPGSPGLVGFLGSSGLPG
NTGLPGLPGPKGEKGSAGLAGFPGMPGLPGIPGASGLKGISGSAGRVGPSGRAGSAGKKG
DRGDPGPVGIPSPRPPMVNLWFKGDKGSRGSAGSDGFPGPRGDKGEAGLPGPPGLPGAPG
FPSTIKGLTGRAGIPGSPGQWGLPGLKGSPGITGFPGIPGESGSQGLSGAPGLPGTFGLP
GSKGDQGQTFGISGSPGPKGQPGESGFKGVKGTDGIIGDVGFPGSKGEDGNVGISGDVGL
PGSPGLPGTAGMRGNPGFPGSPGHPGAPGPLGPSGLMGTKGFPGLPGLHGLNGLPGTKGT
HGNPGPSITGVPGPAGLPGPKGERGSPGTGLGAPGKPGMKGQKGGRGFPGLQGPAGLPGA
PGFSLPSVIVGQPGDPGRPGLDGERGRPGSPGPPGPPGPSSDQGDPGDPGFPGVPGPQGP
TGDQGIPGFSGLPGELGLKGVRGEPGFMGTPGKVGPPGDPGLPGMKGKAGPRGFSGPQGA
PGQTPITEAVQVPPGPMGLPGIDGIPGLTGDPGVQGPIGLQGSKGLPGIPGKDGLNGLPG
PPGALGDPGLPGLQGPPGFEGAPGKKGPFGRAGVPGQSVRVGYTLVKHSQSEQVPLCPAG
MSQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNMDEVCHYAGRNDKSYWL
STTAPIPMMPVGQAQIPQYISRCSVCEAPSQAIAVHSQDVTIPRCPLGWRSLWIGYSFLM
HTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLATVEERQQFRE
EAASEALKAGQLHTRASRCQVCMKSL
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atgcaccctgggttgtggctgctcctggttacgttgtgcctgaccgaggaactggtagga
gctggagagaagaagtcctatggaaagccatgtgggggccaagactgcagcggtggctgt
aaatgctttcctgagaaaggatccagagggcgaccaggaccaattggaattcaaggtcca
gtgggccctcaaggatttgctggccctagtggtttagcaggattgaaaggagaaaggggt
tccccaggccccctgggaccgtatggaccaaaaggagataagggtcccatgggagttcct
ggctttctaggcatcaatgggattccaggccagcccggacagccagggcccaggggccca
cctggcctggatggctgtaatggcactcaaggagctattggatatccaggccctgagggc
tatcctgggcttctcggaccacccgggtttcctgggcggaaaggctctaaaggcgaacct
gtctttgaccaaagtactttcaagggaatgaagggggagcctgggctgcctggactggat
ggaatcactggtccaccaggaacacctggttccccaggagctgtaggacccatgggacca
ccaggattgcaaggtcctccaggccccccaggcttccctggtcctgatgggaatatgggg
ttaggtttccaaggagagaaaggagtcaagggggatgttggcctcccaggccctgcagga
cccccaccatctactggggagctggaatttatgggatttcccaaagggaaaaaaggatcc
aagggtgaaccagggcttccaggtttcccaggaataagtggccctccgggtctcccggga
tttggaactgctggagaaaaaggagaaaagggaatccctggcttcccgggacttaggggt
cccatgggtttggaaggattccaaggccctccaggcagtcagggcaagaagggggcctca
ggtttccctgggcttaatggattcccaggaatgaagggtgaaaagggtgccattggcttg
ccaggcccagatgttttcatcgatacagatggtgctgtgatctcaggttatcctggagac
cccggtatgccaggcctcccaggacttaaaggagatgaaggcatccagggccagcctggc
ccttctggtgtccccggcttaccggctttaccaggtatcccaggtgccctagggccccaa
ggagttccaggtctgaagggggaccaaggaaaccgaggccgcaccacagttgggacagct
ggcccccctggcagagatggtttgccaggcctgcctggcctaccgggcccacctggtccc
acatttgagactggaaccctacagaatgcagagccaggcttccctggtctccgaggagaa
caaggtccaaaaggaaaccctggcctcaaaggaatgaaaggggacttgggcttctgtgcc
tgtgatggtggtatccctaacactggaccacctggggatccaggcctgcctgggcccccc
ggcctcataggccttccaggcattaaaggaatcagaggagatccaggctctgggggtgca
cagggcccatcagggtctccaggtttatttgggcctcacggtcctgtgggccccaaagga
gagaaaggggaaccgactctcagttcaggatcaggggtgccaggggagcaaggtgatcct
ggcccccaggggctccctggggagaccggagccccaggcaaggatggaatacccggctta
ccaggtctgccaggactcccgggtgatggtggacagggcttcccaggtgaaaagggcttc
ccaggacttcctggtgaaaagggccacagtggtccaattggccccccaggaattgggctg
ccgggatctcctggacctcgagggcttcctggagatcaaggaatcaatggattaccaggt
caacaaggcctccctgggcttcccggtgactgctgctgcagggagaacattggtaaagga
gacttagtcacagagggagggatcaccttgccgtgtataattcctgggtcctatggtcca
tcaggcttaccaggagttcccggattcccaggccctaaaggggcccgtggcctccctggg
accccaggccagcccggactgcgtgggaataaaggagagcctggaagtccaggattggct
caccttcctgaattgccaggatttcctggacctcgtggggagaagggcttgcctgggttt
cctgggctccctggaaaagatggcttgcccgggaaacttggcagtccaggtttacccggt
tccaagggagcacccggtgacatctttggcgctgaggacggtgctccaggagagcaaggc
cttcagggattgccaggggacagaggatttcctggagactctggccttccaggacccaag
ggtttgcttgggaagtcaggcctgctaggccccaaaggtgagcggggcagccccggcatg
cccggccacgtgggacagccagggcccccagggcctcagggtctgtttggcgtcaagggc
aaacccgggctcccaggtgcaccaggctttcctggcccttcaggacgtcctgggaagaaa
ggtgtaagaggcgagtcaggtcccccctcatcctctggaaagagaggcctgccagggctg
aaaggctttccaggatctccagggctggttggcttcttggggagctcaggcttgccaggg
aacactgggttgccaggcctgccaggtccgaagggtgagaaggggtctgccgggctggct
ggctttccggggatgcctggtctccctggtattcctggcgcaagtggattaaagggaatt
tctggctctgccggaagagtgggaccatctggacgggctggtagtgctggtaaaaaagga
gaccgaggcgacccggggccagttggaatacccagcccaagacctcccatggtgaacctc
tggttcaaaggagacaaaggctcgagaggctcagctggatcggatggatttcctgggccc
agaggtgacaaaggagaggctggcctccccggaccaccaggcttgcctggagctcctggc
ttccctagtaccatcaagggactcactgggagagctggcatccctggctcccccggacaa
tggggcttacccggcttgaaggggtcccctggaatcacaggtttcccaggaataccaggg
gaaagcggttcacagggccttagtggagctcccggactcccaggaacatttggtctccca
ggttcaaaaggagatcaaggtcagacatttggaatttccggtagcccagggcccaaggga
caacctggggagtctggttttaaaggcgtgaaaggaacagatggaatcattggtgatgtg
ggtttcccaggaagcaaaggtgaagatgggaatgttgggatttctggagatgttggcctt
cctggctccccagggctccccgggactgcaggcatgagaggaaatccagggtttccaggt
tctccaggccatccaggggcacctgggcccctgggaccctctggcctaatgggaaccaaa
ggtttccctggacttcctggtttacatggactgaatgggctaccaggaaccaagggaacc
catggaaatccaggacctagtataaccggcgtgcctgggccagctggcctgcctggtccc
aaaggggaaagaggttctccaggaactggcctcggagccccggggaagccaggcatgaaa
ggacaaaaaggtggccgaggtttcccaggtctccagggtcctgctggtctgcccggtgcc
ccaggcttctccttgccctcagtcatagtgggacagcctggcgaccctgggcgaccaggc
ctagatggagagcgaggccgccccggctccccggggcccccagggccccctgggccatcc
tctgatcaaggagaccctggagaccctggcttccctggagttcctggccctcaagggccc
acgggagaccaaggaattccaggtttctccggcctccctggagagctaggactgaaaggc
gtgagaggtgagcctggcttcatggggactccaggcaaagttgggccacctggagaccca
ggacttcctggaatgaaggggaaggcagggcccagaggcttttccggaccccaaggtgct
cctggacaaacaccaattacagaagctgttcaggttcctcctggacccatgggtctacca
ggcatcgatggcatccctggcctcacgggagaccctggggttcaaggccctataggcctc
caaggctccaaaggtttaccgggcatccctggcaaagatggcctcaacggacttcctggc
ccgcctggcgctctcggtgaccctggtcttcctggactacaaggccctccaggatttgaa
ggcgctccagggaagaagggtcctttcgggagggctggagtgcctgggcagagcgtgaga
gtggggtacaccttggtgaagcacagccagtcggaacaggtgcccctgtgccctgccggg
atgagccagctgtgggtaggttacagcttgctgttcgtggagggacaggagaaagcccac
aaccaggacctgggctttgctggctcctgcctgccccgcttcagcaccatgcccttcatc
tactgcaacatggacgaagtgtgccactacgccgggcgtaatgacaaatcctactggctc
tccaccaccgcccccattcccatgatgcccgtgggccaggcccagatcccccagtacatc
agccgctgctctgtgtgcgaggcaccctcacaggccatcgctgtgcacagccaggatgtc
accatcccgcggtgccccctgggctggcgcagcctctggatcgggtactccttcctcatg
cataccgcggcaggcgccgagggtggcggccagtccctggtgtccccgggctcctgcctg
gaggatttccgagccactcctttcatcgagtgcagcggggcccggggcacctgccactac
tttgccaacaagtacagtttctggctggcgacggtggaagagaggcagcagtttagggag
gaagcggcgtctgaagcactcaaggccgggcagctccacacccgcgccagccgctgccag
gtgtgtatgaaaagcctgtag
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