Lutra lutra (Eurasian river otter): 125091771
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Entry
125091771 CDS
T08100
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04151
PI3K-Akt signaling pathway
llv04510
Focal adhesion
llv04512
ECM-receptor interaction
llv04820
Cytoskeleton in muscle cells
llv04926
Relaxin signaling pathway
llv04933
AGE-RAGE signaling pathway in diabetic complications
llv04974
Protein digestion and absorption
llv05146
Amoebiasis
llv05165
Human papillomavirus infection
llv05200
Pathways in cancer
llv05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125091771
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125091771
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125091771
09142 Cell motility
04820 Cytoskeleton in muscle cells
125091771
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
125091771
09154 Digestive system
04974 Protein digestion and absorption
125091771
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
125091771
09162 Cancer: specific types
05222 Small cell lung cancer
125091771
09172 Infectious disease: viral
05165 Human papillomavirus infection
125091771
09174 Infectious disease: parasitic
05146 Amoebiasis
125091771
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
125091771
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
llv04147
]
125091771
00536 Glycosaminoglycan binding proteins [BR:
llv00536
]
125091771
Exosome [BR:
llv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125091771
Glycosaminoglycan binding proteins [BR:
llv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125091771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125091771
NCBI-ProteinID:
XP_047571691
LinkDB
All DBs
Position
X:complement(36801229..37032542)
Genome browser
AA seq
1691 aa
AA seq
DB search
MKLRGVTLAAGLFLLALSLWGQPAEAAVCYGCSPGSKCDCSGVKGEKGERGFPGLEGHPG
LPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPG
IQGPAGPIGLPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGP
PGQISEQKRPTDVEFQKGDQGLPGDRGLPGPPGIRGPPGPPGGVKGEKGEQGEPGKRGKP
GKDGENGQPGIPGLPGDPGYPGKPGKHGEKGQKGDIGPTGPPGLVIPRPGTGVTVGEKGN
IGLPGLPGEKGERGLPGIQGPPGLPGPPGTAVTGPPGPPGFPGERGQKGDEGPPGISVPG
SPGLDGQPGAPGLPGPPGPPGPHIPPSDEICEAGPPGPPGLPGDRGLQGEQGVKGDKGDT
CFNCIGTGVSGPPGQPGLPGLPGPPGSLGFPGQKGEKGHAGLTGPKGLTGIPGAPGPPGF
PGSKGEPGDILTLPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIAFKG
ERGPPGNPGLPGLPGNRGPMGPVGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTIT
QPGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGN
PGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGLGLPGPPGPPGLPGFKGTLGPKGDRGFP
GPPGLPGRAGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPVGQPGLHG
IPGEKGDPGPPGFDVPGPPGERGSPGIPGAPGPMGPPGAPGLPGKAGASGFPGTKGEMGM
MGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGPPGPVGEKGGKGEPGLPGPPGPVDPDLL
GSKGEKGDPGLPGIPGVPGPKGYQGLPGDPGQPGLSGQPGLPGPSGPKGNPGLPGNPGLT
GPPGLKGSIGDMGFPGPQGVKGSPGLPGVPGQPGSPGLPGQKGEKGDPGVSGIGLPGLPG
PKGEPGLPGYPGNPGIKGSRGDTGLPGLPGTPGAKGQPGLPGFPGTPGLPGAKGINGPPG
NPGLPGEPGPVGGGGRPGPPGPPGEKGNPGQDGIPGPAGQKGEPGQPGFGIPGPPGLPGL
SGQKGDGGLPGIPGNPGLPGPKGEPGFQGFPGVQGPPGPPGSPGPALEGPKGNSGPQGPP
GRPGPPGFQGLPGPEGPRGLPGNGGIKGERGNPGQPGQPGLPGLKGDQGPPGLQGNPGRP
GLNGMKGDPGLPGVPGFPGMKGPSGVPGSTGPEGDPGLVGPPGPPGLPGPSGQSIIIKGD
VGPPGIPGQPGLKGLPGLPGPQGLPGPIGPPGDPGHNGLPGFDGAGGRKGDPGLPGQPGT
RGLDGPPGPDGMQGPPGPPGTSSFAHGFLITRHSQTTDAPQCPHGTVQIYEGFSLLYVQG
NKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLKG
QNIQPFISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGAEGSGQAL
ASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVDVSDMFSKPQSETLKAGDLRTR
ISRCQVCMKRT
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgcgtggagtcaccctggctgccggcttgttcttactggccctgagtctttgg
gggcagcctgcagaggctgcggtttgctatgggtgttctccaggatcaaaatgtgactgt
agtggtgtaaaaggagaaaagggggagagaggatttccaggtttggaaggccatccaggt
ttgcctggatttccaggtcctgaagggcctccagggcctcggggacaaaagggtgatgat
ggaattccagggccaccgggaccaaaaggaatcagaggtcctcctggacttcctggattt
ccagggacaccaggtcttcctggaatgccaggccatgatggggccccaggacctcaaggt
atccctggatgcaatggaaccaagggagaacgtggatttccaggcagtcccggttttcct
ggtttacagggtcctccaggacctcctgggatcccaggtatgaagggagaaccaggcagt
ataattatgtcatcactgccaggaccaaagggtaatccgggatatccaggccctcctgga
atacaaggcccagctggtcccattggtttaccagggccaattggtcccccaggaccacca
ggtttgatgggccctcctggtccaccaggacttccaggaccaaaggggaatatgggctta
aatttccagggacccaagggtgaaaagggtgagcaaggtcttcagggcccccctgggcca
cctgggcagatcagtgagcagaaaagaccaactgatgtagagtttcagaaaggagatcag
ggacttcctggtgaccgagggcttcctggacctccagggatacgtggtcctccagggcct
ccaggtggtgtgaaaggtgagaagggtgagcaaggagagcctggcaaaagaggtaaaccc
ggcaaagatggagagaatggccaaccaggaattccaggtttgcctggtgatcctggttac
cccggtaaaccaggaaagcatggagaaaagggccaaaagggtgacattggcccaactggg
cctcctggacttgtaattcctaggcctgggactggtgtaactgtaggagaaaaaggaaac
attggattacccggcttgcctggagaaaaaggagagcgaggacttcctggaatacagggt
ccgcctggccttcctggacctccagggactgcagttaccggtcctcctggcccccccggc
tttcctggagaaaggggccagaaaggtgatgaaggtccacctggaatttctgttcctgga
tctcctggacttgatggacagcctggggctcctggacttccagggcctcctggccctcct
ggccctcacattcctcctagtgatgagatatgtgaagcaggccctccaggccctccggga
ttgccaggtgatagaggactccaaggagaacaaggagtgaaaggtgacaagggtgacacc
tgcttcaactgtattggaactggtgtttcagggcctccaggtcaacctggtctaccaggt
cttccaggtcctccaggatctcttggtttccctggacagaagggagaaaaaggacatgct
ggtctaaccggtcccaaaggattaacaggcataccaggagctccaggtcctccaggcttt
cctggatctaaaggtgaacctggtgatatcctcactttgccaggaatgaagggtgacaaa
ggagaattgggttccccgggagcccctgggcttcctggtttacctggtacccctggacag
gatggattgccagggcttcctggccccaaaggagaacctggtggaattgcttttaagggt
gaaagaggtccccctgggaatccaggccttccaggtctcccagggaatagggggcctatg
ggccctgtgggttttggccctccaggccctgtaggtgaaaaaggcatacaaggtgtggca
ggaaatccaggccagccaggaataccaggtcctaaaggtgatccaggtcagaccataacc
cagccagggaagcctggcctgcctggtaacccaggcagagatggtgaagtaggtcttcca
ggtgatcctggacttcccggacagccaggcttgccaggaatacccggtagtaaaggagaa
ccaggtatccctggaattgggcttcccggaccgcctggtcccaaaggtttccctggaaat
ccaggacctccaggagcacctgggacacctggaagaattggtctagaaggtcctcctggg
ccaccaggctttcccggacctaagggagaaccaggacttgggctacctgggccacctgga
cccccaggactcccaggtttcaaaggaacacttggtcccaaaggggatcgtggtttccca
ggacctccaggtcttccaggacgcgctggcttggatgggctccctggaccaaaaggtgat
gttgggccaaatggacaacctgggccaatgggacctcctgggcttccaggaataggtgtt
cagggaccaccagggccaccagggattcctggaccagtaggccaacctggcctgcatgga
ataccaggagagaagggagacccagggcctcctgggtttgatgttccaggaccccctgga
gagagaggcagtccaggaattcctggagcacctggtcctatgggacccccaggagcacca
gggcttccaggaaaagcaggtgcctctggatttccaggtaccaaaggtgaaatgggtatg
atgggacctccaggcccaccaggacctttgggaattcctggcaggagtggtgttcctggt
ctcaaaggtgatgatggtttgcagggtcagccaggacctcctggccctgtaggagaaaaa
ggtggtaaaggagagcctggccttccaggccctcctggaccagtggatccagatctattg
ggctcaaaaggagagaagggggaccctggcttaccaggtattcctggagttccagggcca
aaaggttaccagggtttgcctggagacccagggcaacctggactgagtggacaacctgga
ttgccaggaccatcaggtcccaaaggtaaccctggtcttcctgggaatccaggacttaca
ggacctcctggacttaaaggaagcataggtgatatgggttttccaggccctcagggtgtg
aaagggtctcctggacttcctggagttcctggacaacctggctctccaggattacctgga
cagaaaggagaaaaaggtgatcctggtgtttcaggcattggtcttcctggtcttcccggc
ccaaagggtgaacctggtctgcctggatacccaggaaaccctggaatcaaaggttctagg
ggagatactggtttgcctggattaccagggacccctggagcaaaaggacaaccaggcctt
cctggattccctggaaccccaggacttcctggagcaaaaggtattaatggtcctcctggg
aaccctggccttccaggagaacctggtcctgtaggtggtggaggtcgtcctgggccacca
ggtcctccaggtgaaaaaggcaacccaggtcaagatggtattcctggaccagctggacag
aagggcgaaccaggtcagccgggctttggaatcccaggaccccctggactcccaggactt
tctggtcaaaagggtgatggaggattacctggcattccaggaaaccctggccttcctggt
ccaaagggagaaccaggctttcagggtttccctggtgtgcagggtcccccaggccctcct
ggttctccaggtccagctctggaaggccctaaaggcaactctgggccccagggtcctcct
gggagaccaggtcctccaggttttcaaggtctaccaggtccagaaggtccccggggtctc
cctggaaatggaggtattaagggagagagaggaaacccaggccaacctgggcaacctggt
ttgcctggtttgaaaggagaccaaggaccaccaggactccagggtaatcctggccgacca
ggtctcaatggaatgaaaggagatcctggtctccctggtgttccaggatttccaggcatg
aagggacccagtggagtacctggttcaactggccctgagggggatccaggacttgttggc
cccccaggtccccctggattacctggtccttcaggacagagtattataatcaaaggagat
gttggtccaccagggatcccaggccagcctggattaaaaggtctgcctggactaccagga
cctcaaggcctaccaggtccaattggccctccaggagatccgggacacaatggactccct
ggctttgatggtgcaggagggcgcaaaggagatccaggtctgccaggccagccaggtacc
cgtggtttggatggtccccctggaccagatggtatgcaaggtcccccaggtcctccagga
acttcttctttcgcccatggattcctcatcacacgtcacagccagacaacagatgcacca
caatgcccacatggaactgtccagatttatgaaggcttttctctcctgtatgttcaagga
aataaaagagctcatggtcaagacttggggacggctggcagctgccttcgtcgcttcagt
accatgcctttcatgttctgcaacatcaataatgtttgcaactttgcttcaagaaatgac
tattcttactggctgtccaccccagagcccatgccaatgagcatggagcccctgaagggc
cagaacatccagccatttattagtcgatgtgcagtatgtgaagctccagccgtggtgatt
gcagttcacagtcagaccatccagattccccattgtcctcagggatgggattctctctgg
attggctactccttcatgatgcacacaagcgcaggagcagagggctcaggtcaagccttg
gcctcccccggttcctgcttggaagagtttcgttcagctcccttcattgaatgtcatggg
cggggtacctgcaactactatgccaattcctacagcttttggctagcaactgtagatgtg
tcagacatgttcagcaaacctcagtcagaaacactgaaagcaggagacttgaggacacgt
attagccgatgtcaagtgtgcatgaagaggacataa
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