Lutra lutra (Eurasian river otter): 125093138
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Entry
125093138 CDS
T08100
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04151
PI3K-Akt signaling pathway
llv04510
Focal adhesion
llv04512
ECM-receptor interaction
llv04820
Cytoskeleton in muscle cells
llv04974
Protein digestion and absorption
llv05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125093138
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125093138
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125093138
09142 Cell motility
04820 Cytoskeleton in muscle cells
125093138
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125093138
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
125093138
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
llv04147
]
125093138
00536 Glycosaminoglycan binding proteins [BR:
llv00536
]
125093138
Exosome [BR:
llv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125093138
Glycosaminoglycan binding proteins [BR:
llv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125093138
Hyaluronan
Extracellular matrix or blood plasma proteins
125093138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
125093138
NCBI-ProteinID:
XP_047573867
LinkDB
All DBs
Position
1:complement(517728..547811)
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AA seq
1031 aa
AA seq
DB search
MLRGPCSALLLWGLLGAVHAQQQEVTAPGLSERNSCPGPRPGQASDSPVPPEKADCPINV
YFVLDTSESVTMQSPIDSLLYHVRQFVRQFVSQLQDETYLDQVALSWRYGGLHFSDVVRV
FSPPDSDRASFTKSLDSIVSIRKGTFTDCALANMTQEIRQLKAKGGVHFAVVITDGYVTG
SPCGGVKLQAERAREEGIRIFTVAPDQIPNEQGLREMASMPLELYRNNYATVRPDLEIDQ
DTINRIIKVMKHEAYGECYKVSCLEIPGPPGPKGYRGQKGAKGNMGEPGEPGQKGRQGDP
GIEGPIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDP
GSRGPDGYAGEAGSPGEQGDQGIKGDAGRPGRRGPPGDNGAKGSKGYQGNNGSPGSPGVK
GAKGGPGPRGPKGEPGRRGDPGAKGSPGSNGPKGEKGDPGPEGPRGLAGEVGNKGAKGDR
GLPGPRGPQGALGEPGKKGSRGDPGDAGPRGESGQPGPKGDPGRPGFSYPGPRGTPGEKG
EPGPPGPEGGRGDFGAKGAPGRKGEKGEPADPGPPGEPGPRGPRGSPGPEGEPGPPGDPG
LTECDVMTYVRETCGCCDCEKRCGALDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAI
AKDPKSETGTRVGVVQYSHEGTFEAIQLDDERIDSLSSFKEAVKNLEWIAGGTWTPSALK
FAYNQLIKESRRQKTRVFAVVITDGRHDPRDDDLNLRALCNHDVTVTAIGIGDMFHETHE
SENLYSIACDKPQQVRNMSLFSDLVAEKFIDDMEDVLCPDPQIVCPDLPCQTELYVAQCT
QRPVDIVFLLDGSERLGEQNFYKARRFVEEVSRRLTLARRDDDPHNARVALLQFGGPGEQ
QVEFPLTSNLTAIHQALEGARYLNSFSHVGAGIVHAINHVVRGARAGARRHAELAFVFLT
DGVTGNDSLEEAVHSMRKQNVVPTVVAVGGDVDTDVLSKISLGDATAVFREKDYDSLAQP
GFFDRFIRWIC
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgctccgaggtccctgctctgccctcctgctctgggggctcctgggggccgtccacgcc
cagcagcaggaggtcaccgcccccggcctctctgagagaaacagctgcccaggcccccgc
cctgggcaggccagtgactcccccgtgcccccagagaaggccgactgccccatcaacgta
tacttcgtgctggacacctcggagagcgtcaccatgcagtcgcccattgacagcctgctg
taccacgtgaggcagttcgtgcggcagtttgtcagccagctgcaggacgagacctacctg
gaccaggtggccctgagctggcgctacgggggcctgcacttctccgacgtggtgagggtg
ttcagcccgcccgacagcgaccgggcctccttcaccaagagcctggacagcatcgtctcc
atccggaagggcaccttcaccgactgcgcgctggccaacatgacccaggagatccggcag
ctcaaggccaagggcggggtccactttgcggtggtcatcaccgacggctacgtcaccggc
agcccgtgcgggggcgtcaagctgcaggccgagcgggctcgcgaggagggcatccggatc
ttcaccgtggcccccgaccagatcccgaacgagcagggtctgcgggagatggccagcatg
ccccttgagctctaccgcaacaactacgccaccgtgcgtcccgacctggagatcgaccag
gacaccatcaatcgcatcatcaaggtcatgaaacatgaagcctatggagagtgctacaag
gtgagctgtctggagatccccgggccacccggccccaagggctaccgcggacagaagggt
gccaagggcaacatgggcgagccaggagagcctgggcagaagggacgacagggagaccca
ggcatcgaaggccccattggattcccaggacccaagggtgttcctggtttcaaaggagag
aagggtgaatttggagccgacgggaggaagggggctcctggcctggccggcaagaacggg
accgatggacagaagggcaagctggggcgcatcgggcctcctggctgcaagggagacccc
gggagtcggggccccgacggatacgcaggggaagccggcagccctggggagcaaggggac
cagggcatcaagggagatgctggccgcccgggacgccgaggacccccaggagacaacggg
gccaaagggagcaagggttaccaaggcaacaacggttccccgggaagtcctggcgtgaaa
ggtgccaagggtggaccagggccccgaggacccaaaggcgagcctgggcgcagaggggac
ccaggagccaagggcagcccaggcagcaacggccccaagggggagaagggagaccctggc
cctgagggtccccggggtctggccggagaggtcggcaacaaaggagccaagggagaccga
ggcttgcctggacccagaggccctcagggggctctcggagagcccgggaagaagggatct
cggggagaccccggcgacgctggtccccgtggagagtcaggacagcctggtcccaagggg
gaccccggcaggcctggattcagctacccaggaccccgaggaacacccggagagaaaggc
gagcctggcccaccgggccctgaggggggcagaggtgactttggtgccaagggagcgccc
gggaggaaaggcgagaagggcgagcctgcagatcctggtccccctggcgagcctggccct
cgggggccgagaggatccccaggacccgagggagagcccggcccccctggagaccccggc
ctcacggagtgcgacgtcatgacctacgtgagggagacgtgcggctgctgcgactgcgag
aagcggtgcggggccctggacgtggtgttcgtcatcgacagctccgagagcatcggctac
accaacttcactctagagaagaacttcgtcatcaacgtggtcaacaggctgggggccatt
gccaaggaccccaagtcagagacgggaacccgcgtgggcgtggtgcagtacagccacgag
ggcacctttgaggccatccagctggacgacgagcgcatcgactcactgtccagcttcaag
gaggccgtcaagaacctggagtggatcgccggtggcacctggacgccctcagccctcaag
ttcgcctacaaccagctcatcaaagagagccggcgccagaagacccgggtgtttgcggtg
gtcattacggatggccgccacgacccccgggacgatgacctcaacctgcgggccctgtgc
aaccacgacgtcacggtgacggccatcggcatcggcgacatgttccacgagacgcacgag
agcgagaacctatactccatcgcctgtgacaagccccagcaggtgcggaacatgagcctc
ttctctgacctggtggccgagaagttcatcgacgacatggaggacgtcttgtgcccagac
cctcagatcgtgtgcccagaccttccctgccaaacagagctgtacgtggcccagtgcacg
cagcggccagtggacatcgtcttcctgctggacggctcggagcggctgggcgagcagaac
ttctacaaggcgcggcgcttcgtggaggaggtgtcccggcggctgacgctggcgcgcagg
gacgacgacccacacaacgcgcgcgtggccctgctgcagttcgggggcccgggcgagcag
caggtggagttcccgctcacctccaacctgacggccatccaccaggcgctggaaggcgcg
cgctacctcaactccttctcgcacgtgggcgcgggcatcgtgcacgccatcaaccacgtg
gtgcgcggcgcgcgggcaggggctcgccgtcacgccgagctggccttcgtgttcctcacc
gacggcgtcacgggcaacgacagcctggaggaggccgtgcactccatgcgcaagcagaac
gtggtgcccaccgtggtggccgtgggcggcgacgtggacacggacgtgctgtccaagatc
agcctgggcgacgcgaccgccgtcttccgcgagaaggactacgacagcctggctcagccc
ggcttctttgaccggttcatccgctggatctgttag
DBGET
integrated database retrieval system
