Lutra lutra (Eurasian river otter): 125093221
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Entry
125093221 CDS
T08100
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125093221
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
llv04147
]
125093221
00535 Proteoglycans [BR:
llv00535
]
125093221
00536 Glycosaminoglycan binding proteins [BR:
llv00536
]
125093221
Exosome [BR:
llv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125093221
Proteoglycans [BR:
llv00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125093221
Glycosaminoglycan binding proteins [BR:
llv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125093221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
125093221
NCBI-ProteinID:
XP_047574046
LinkDB
All DBs
Position
1:complement(1054827..1142048)
Genome browser
AA seq
1732 aa
AA seq
DB search
MARHPCGRVGLLLLLPLLPPLLLTYRPAAAQANLLSLNWLWSTRTDEPPGELVSAPPQSP
HVQPREDTTTHSAPQHGPSEQGRAPANPVLPVERLETGQGRASTTPAASTAGPDMKEENI
AGMGAKILHVAQGIRSFVQLWDDTTTPAGSPAAETPAPVTPAAPLTLARPSSTPQENATA
LWLGSMAPSSPDTPRMEAGTPPGPTQLPPFPGGPSLPPPSPGRASLSSALGGAPPWGSQP
SPGQPQDPDSGGLLPVAARPSQRHRPPDISKPSPRLLALVAGPPGALASPLALSSDPPTL
AARISLSSVTVDRGAWVPYGADSVGPGLAGVSALLGAAPLTPTGQPVPGTAGRCLPLPPS
LPVCGRLGIGRSWLPNHLHHGSSEEVQAAARAWGGLLQTRCHRFLAWFFCLLLAPPCAAS
LLPAPPPCRQFCEALEDACWSHLDGGGLPVPCASLPAREDGYCVFIGPGAETLGAEVGLL
QLLGEPPPQQVTQVEDPDVGPAFVFGPDANSGQAARYHFPGRFFRDFSLHFHVRPATEGA
GVLFAVTDAAQAVVSVGVKLSGVRDGHQQIQLLYTEPGAARTHTAASFRLPAFTGQWTRF
ALSVDGATAALFVDCELFQRVPLARSPRGLELEPGAGLFVAQAGGADPDKFQGAIAELRV
RRDPHVSSLHCLEEDDEDSGGASGDFGSGLEETREPLREPSGPSSKPSLPEAPPVTSPPL
AAGGNEEDSRTEEIEEETTVSALAARTLPSLDMVTAGSVWSLGGGLDEGPAVRSPEAPPV
PGPQGPPGPPGPPGKDGIPGRDGEPGDPGEDGRPGDPGPQGFPGTPGDAGPKGEKGDPGV
GPRGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLESLRGPRGFPGPPGPPGVPGLP
GEPGRFGMNSSDVPGPAGLPGVPGRDGPPGLPGTPGPPGPPGRDGEPGKTGQKGSPGDAG
APGPKGGKGDPGPAGAPGENGLAGAPGPAGPPGPPGPPGPPGPGLTTGFDDMEGSGVPFW
PTAQGASGPQGPAGPPGVKGDPGVTGPPGAKGEVGADGPPGFPGLPGREGTAGAQGPKGE
KGTQGEKGDPGRDGVGQPGLPGPPGPPGPVVYLSEQDRVLAGVPGPEGRPGFAGFPGPAG
PKGDLGSKGQQGLPGPKGEKGEPGPVFSPDGSMLAPGQKGAKGEPGFRGPPGPYGRPGHK
GEIGFPGRPGRPGMNGLKGEKGEPGHASVGFGVRGPPGPPGPPGPPGPPGVPIYDSNAFT
ESGRPGAPGLPGLQGPSGPKGDKGEVGPPGPPGQFPLDLLPLEAEMKGEKGDRGDPGPKG
ERGEPGGGGFFGSSVPGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGHEGRQGPPG
PPGPPGPPGPPSFPGPYRQTISVPGPPGPPGPPGPPGTMGTSSGVRIWATYQTMLDKVPE
VPEGWLIFVAEREELYVRVRGGLRKVLLEARTPLPRGTDNEVAALQPPAGNPYPRRELTH
STVRPWRADDILASPPRLLDPQPYPGATHHGSYRHFQPARPTGGPTHSHTHQDYQPVLHL
VALNSPQPGGLRGIRGADFQCFQQARAAGLPGTFRAFLSSRLQDLYSVVRRADRTGVPIV
NLRDEELFPSWEALFSGSEGQLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLTN
SYCETWRTETAGVTGQASSLLAGRLLEQKAASCHHAFIVLCIENSFMTSSSK
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcacccctgcggccgcgtgggcctgctgctgctgctgccgctgctgccgccg
ctgctgctcacctaccgccccgccgccgcccaggctaacctactgagcctgaactggctg
tggtccactaggacggacgagcccccgggtgaactggtctccgcgcccccgcagagcccc
catgtgcagcccagggaggacaccaccacgcactcggccccccagcatggcccctcggag
caggggagagcccctgccaaccccgtactccccgtggagaggctggagactggccagggc
agggcctccaccacacccgctgcctccaccgcgggcccggacatgaaggaggagaacatt
gccggcatgggagccaagatcctgcatgtggctcagggcatccggagctttgtccagctg
tgggatgacaccacaacccccgcgggctcccccgcggcagagacgccagcccctgtgacc
cccgcagcccccctcacactggccaggccctccagcaccccccaagagaacgccaccgct
ctttggctgggcagtatggccccgagctctccagacaccccaaggatggaggccggcacc
ccgccggggcccacccagctgcctcccttcccgggcgggccctcgctgccaccaccttct
ccaggtagagcttctctgtcctccgcgctgggtggggcccctccctgggggagccagcca
tctccggggcagccccaggatccggacagtggaggactcctgcccgtggcagcccgtccc
agccagcggcaccgaccccctgacatcagcaagccctcgccacgtctgcttgccctggtg
gcgggtcccccgggcgccctcgcttctcccttggctctctcctctgaccccccgacgctg
gcggctcggatctcactctcctctgtaactgtggacaggggtgcttgggttccttatggg
gctgactctgtggggccgggtcttgctggtgtctccgcgctgctgggggcggccccgctg
acccccactgggcagcccgtgcccgggaccgctggccgctgcctgccgctgcctccctcc
ctgccggtctgcggccgcctgggcatcgggcgctcgtggctgcccaaccacctgcaccac
gggagcagcgaggaggtgcaggccgccgcccgggcctgggggggcctcctccagacgcgc
tgccaccgtttcctcgcctggttcttctgcctgctgctggccccaccctgtgccgccagc
cttctgcccgcgcccccgccctgccgccagttctgcgaggccctggaggacgcgtgctgg
agccacctggacgggggcgggctgccggtcccctgcgcctcgctcccggcccgggaggac
ggctactgcgtgttcatcgggccgggtgcagaaactctgggcgcggaggtggggctcctg
cagctgctcggagagcccccgccccagcaggtgacccaggtggaggaccccgacgtgggg
ccggccttcgtcttcggcccggatgccaacagcggccaggccgcccgctaccacttcccc
ggccggttcttccgcgacttctcgctgcacttccacgtccggcccgccaccgagggcgcg
ggggtgctgttcgccgtcacggacgcggcgcaggcggtggtctccgtgggcgtgaagctg
tcgggcgtgcgcgacgggcaccagcagatccagctgctgtacacggagccgggggccgcg
cggacccacacggccgccagcttccgcctgcccgccttcaccggccagtggacgcgcttt
gccctcagtgtggacggtgcgaccgcggcgctgttcgtggactgcgagttgttccagcgg
gtgccgttggcgcgctccccgcggggcctggagctggagcccggcgctggcctcttcgtg
gcccaggccggaggagcggaccctgataagttccagggcgcgatcgcagagctgagggtg
cgcagggacccccatgtgagctccctgcactgtctggaggaggacgatgaggacagcggc
ggggcatccggagacttcgggagcggactggaggagacccgggaacccctcagggagccg
tcgggtccgtcgtccaaacccagcctccctgaggctcccccagtcacttctccacccttg
gctgcgggcgggaatgaggaagattccagaaccgaagaaattgaggaagaaaccacggtg
tctgcgttggcagctcggaccctccccagcttggatatggtcaccgcagggagcgtttgg
agcctcgggggcggcctggatgagggtcctgctgtgcggagccccgaggcaccgcctgta
cccgggccgcagggcccccctggccccccagggccaccagggaaggatggcatccccgga
agggatggcgagccaggggatcctggtgaagacgggagaccgggtgaccctgggccacag
ggcttccccgggaccccgggagacgcgggccccaagggcgagaagggggaccccggggtc
gggccaagaggacctccaggaccccaagggcctccagggccaccaggaccctccttcagg
catgacaagctgaccttcattgacatggaggggtccgggttcggcggagacctggagagc
ctccggggccccagaggcttccccggccccccggggcccccaggcgttccaggcctgccc
ggagagccaggccgcttcgggatgaacagctcagacgtgccaggacccgctggcctccct
ggtgtgcctgggcgggacgggccccctgggcttcctggcaccccgggaccgccaggccct
ccaggaagagacggggaaccagggaagacgggccagaaaggcagccccggcgacgcgggc
gccccgggacctaagggaggcaagggtgacccgggccccgctggcgctcctggggagaat
ggcttggcaggagcccctggaccagccggaccaccagggccccccggcccccccgggcca
ccaggaccaggactcaccacagggtttgatgacatggaaggctccggggtacccttctgg
ccgacggctcaaggagccagtgggccgcagggacccgccggcccgcccggggtcaagggg
gatcctggggtaaccggaccgccgggcgccaagggagaagtcggggctgacggacctcct
gggttccctggcctccctggcagagagggcacagctggagcccagggacccaaaggagaa
aaagggacccagggagagaaaggcgacccagggagggacggagtaggacagcctggcctc
cccggaccccccggacctccagggcctgtcgtctacctgtcggagcaggatagagtgctg
gccggcgtgcctggacccgagggccggccagggttcgcgggctttcccggaccggctggg
ccaaagggagatctgggctcaaaaggccagcagggcctcccgggacccaagggtgagaaa
ggcgagcccggcccggtcttcagccccgatggcagcatgctggcaccaggccagaaaggg
gccaagggagagcctggcttccgaggacccccgggtccctacggacggccggggcacaag
ggagagattggcttccccgggcggccgggtcgccccgggatgaacggattgaaaggggag
aagggggagccaggacatgccagcgttggcttcggtgtgaggggtccacccggtccccct
gggcctccagggcccccagggcctcctggggttcccatttatgacagcaacgcctttacg
gagtcgggccgccctggagccccaggattgccagggctccaggggccttctggacccaag
ggtgacaaaggagaggtgggccctccaggaccaccagggcagttcccgttggacctgctc
ccgctggaggctgaaatgaagggggagaagggggaccgaggggaccctgggccgaagggc
gaacggggtgagcccgggggtggtggattcttcggctcaagtgtgcccggaccccccggc
ccaccaggctaccctgggattccgggccccaagggagagagcattcggggccagcctggc
ccacctggacctcagggaccccctggcatcggccatgaggggcgtcagggaccccctggg
ccccctggacccccgggtcccccagggcccccttcctttcctggcccttaccggcaaacc
atcagtgttcctggccccccaggcccacctgggccccctgggccccctggaaccatgggc
acgtcctccggggtgaggatctgggccacgtaccagaccatgctggacaaggtgcctgag
gtgccagagggctggctcatcttcgtggccgagagggaggagctgtacgtccgggtccgt
ggcgggctgcggaaggtcctgctggaggcacggacgccgctcccacgtgggacggacaac
gaggtggccgccttgcagccccctgcgggcaacccatacccccggcgggagctcacccac
tccacggtgcggccctggcgggcagatgacatcctggccagccccccgcgtctgctggac
ccccagccctaccctggggccacacatcatggctcctaccggcacttccagccggctcgc
cccaccggcgggcccacccacagccacacccaccaggactaccagcccgtgctgcacctg
gtggccctgaacagcccccagccgggtggcctgcgtggcatccgaggggccgacttccag
tgcttccagcaggcgcgcgctgccgggctgcccggcaccttccgcgccttcctgtcctcg
aggctgcaggacctctacagtgtggtgcgccgagccgaccgcaccggcgtgcccattgtc
aacctcagggacgaggagctgttccccagctgggaggccttgttctcgggctccgagggc
cagctgaagcctggggcccgcatcttctctttcgacggcagagacgtcctgcagcaccca
gcctggccccagaagagcgtgtggcacggctcggaccccagcgggcgccggctgaccaac
agctactgtgagacgtggcggacagagactgcgggcgtcacgggccaggcgtcctccctg
ctggccggccggctgctggagcagaaggccgcgagctgccaccatgccttcatcgtgctc
tgcatcgagaacagcttcatgacctcctcctccaagtag
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