Lutra lutra (Eurasian river otter): 125093758
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Entry
125093758 CDS
T08100
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03020
RNA polymerase
llv03420
Nucleotide excision repair
llv05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125093758
09124 Replication and repair
03420 Nucleotide excision repair
125093758
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
125093758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llv03021
]
125093758
03400 DNA repair and recombination proteins [BR:
llv03400
]
125093758
Enzymes [BR:
llv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125093758
Transcription machinery [BR:
llv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125093758
DNA repair and recombination proteins [BR:
llv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125093758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
125093758
NCBI-ProteinID:
XP_047575351
LinkDB
All DBs
Position
2:187603107..187651083
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacgcggacgaggatatgcaatatgatgaagatgatgatgaaatcaccccagac
ttgtggcaagaagcatgctggattgtaatcagttcctattttgatgagaagggcttggtc
agacaacagctggattcttttgatgagtttattcagatgtctgttcaaagaattgtggaa
gatgctccacctatagacctacaagctgaagctcagcatgctagtggagaagttgaagaa
ccgccaagatacttgctgaagtttgaacaaatttacctctccaaacctacccattgggaa
agagatggtgctccttcaccaatgatgccaaatgaggccagattaagaaatctcacgtat
tctgctccactttatgttgatataacaaaaacagtcattaaggaaggtgaagaacaactt
caaactcagcatcagaaaacttttataggaaaaattccaattatgttgcgttcaacttac
tgcctcttgaatggcttaacagatcgtgatctttgtgagttaaatgaatgccccttggat
cctggtggatatttcattattaatggatcagaaaaggttctgattgctcaagagaaaatg
gcaacaaacacggtctatgtgtttgccaaaaaggattctaaatatgcctacacaggagag
tgtagatcatgtttggagaattcatcccggcccaccagtactatttgggttagcatgctg
gcaagaggaggacagggtgcgaaaaagagtgctattggtcagcgcattgtggcaacccta
ccatatatcaagcaggaagttcccatcattatcgtgttcagagcattaggttttgtgtct
gacagagatattttagagcatattatttacgattttgaagatccagagatgatggaaatg
gtgaaaccttctctcgatgaagcttttgtcatccaggaacagaatgttgcactaaatttc
attggttcaagaggggcaaagcctggtgtcactaaagagaaaagaattaaatatgcaaaa
gaagtcttacaaaaagaaatgcttcctcatgttggtgtcagcgacttttgtgagaccaaa
aaagcttattttttggggtacatggttcataggttgcttctagcagccttgggtagaaga
gaattggatgacagggatcactatggaaacaaaagattggatcttgctgggccactgctt
gcgttcttatttcgaggtatgtttaagaatttgcttaaagaagtacggatctatgcacag
aagtttattgatcgaggaaaggattttaatttggagttggcaattaaaacaaggattatc
tctgatggcctaaaatactctttagctacgggaaactggggtgaccaaaagaaagctcat
caagccagagctggagtatctcaggtattaaaccgcctgacctttgcatcaactctttct
cacctacgtcgtttaaattcacctatcggtagagacggcaagctagccaaaccaagacag
ttgcataatacgttgtggggaatggtgtgtcctgcggaaaccccagagggccatgctgta
ggacttgtgaagaatttagctctgatggcttatatttcagttggatctcagccttctcca
attttggaatttttagaagaatggagtatggaaaatttagaagaaatttctcctgcagct
attgccgatgcaaccaagatttttgttaatggctgctgggttggaatacataaagatcct
gaacaacttatgaacaccctaaggaaattgcggcgtcagatggacatcattgtgtctgaa
gtttctatgattagagatattcgagagagggagattcggatctatacagatgcaggccgt
atttgccggccacttctgattgtggaaaaacaaaaactacttttgaagaagagacatatt
gatcaattgaaagagagagaatataacaactacagttggcaggatctcgtggccagtggg
gtagtagaatatattgacaccctggaagaagaaacagtgatgcttgcaatgactccagat
gatttacaggagaaagaagtagcttattgttccacatatacacactgcgagatccaccca
tcaatgattcttggtgtctgtgcatctattattccctttcctgatcataaccagtcccct
agaaacacatatcagtctgctatgggtaagcaggctatgggagtttatatcaccaacttc
catgttcgtatggatacactggcccatgttctgtattatcctcaaaaaccacttgtgact
acacggtctatggaatatctacgatttcgggagctgccagcaggtatcaactccattgtg
gccattgcatcgtacacgggatataaccaagaagactctgttatcatgaatcgttcagct
gtagacagaggctttttcaggtctgtcttctatcgatcgtacaaagaacaggaatctaaa
aaaggatttgatcaagaagaagtttttgagaagccaactcgtgaaacatgccagggtatg
aggcatgccatttatgacaagctggatgatgatggtttgatagctcctggagtccgtgta
tcaggagatgatgttattataggcaaaacagtcaccttgcctgaaaatgaagatgaattg
gagggcactaatagacgctacaccaagagagattgtagcacattcctgagaaccagtgag
acaggcattgtggatcaagttatggtaactctcaaccaggaaggatataaattttgtaag
ataagggtccgctctgttagaattccacagattggagacaaatttgctagtcgacatggt
caaaagggtacttgtggtattcagtacagacaagaggatatgcctttcacctgtgagggt
atcacccctgatatcatcataaatccccatgccattccctctcgaatgactattggtcac
ttgattgaatgtcttcaagggaaggtatcagccaacaagggcgaaattggtgatgccact
ccatttaatgatgctgttaatgtgcagaagatttctaatctattatctgattatggctac
catcttagaggaaatgaggtcctgtacaatgggttcactggtcgaaaaatcacatcacag
atttttattggtcccacatattatcagcgtttgaagcatatggtggatgataagattcat
tctcgtgccaggggacctattcagatccttaatagacagcccatggagggtagatctcgt
gatggtggcctgcgttttggagaaatggaacgagattgtcagattgcccatggagcagcc
cagtttttaagggaaagattgtttgaggcatcagatccgtatcaggttcatgtttgcaat
ctttgcggaataatggcgattgctaacacgaggacccatacgtatgaatgccgcggttgc
cgcaataaaacccagatttctttggtgcgaatgccttacgcgtgcaaactgctctttcag
gaactcatgtctatgagtattgcccctcgaatgatgagtgtttag
DBGET
integrated database retrieval system
