KEGG   Lutra lutra (Eurasian river otter): 125094828
Entry
125094828         CDS       T08100                                 
Name
(RefSeq) collagen alpha-2(IV) chain
  KO
K06237  collagen type IV alpha
Organism
llv  Lutra lutra (Eurasian river otter)
Pathway
llv04151  PI3K-Akt signaling pathway
llv04382  Cornified envelope formation
llv04510  Focal adhesion
llv04512  ECM-receptor interaction
llv04820  Cytoskeleton in muscle cells
llv04926  Relaxin signaling pathway
llv04933  AGE-RAGE signaling pathway in diabetic complications
llv04974  Protein digestion and absorption
llv05146  Amoebiasis
llv05165  Human papillomavirus infection
llv05200  Pathways in cancer
llv05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:llv00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    125094828
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125094828
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    125094828
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125094828
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    125094828
  09154 Digestive system
   04974 Protein digestion and absorption
    125094828
  09158 Development and regeneration
   04382 Cornified envelope formation
    125094828
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    125094828
  09162 Cancer: specific types
   05222 Small cell lung cancer
    125094828
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    125094828
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    125094828
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    125094828
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:llv04147]
    125094828
   00536 Glycosaminoglycan binding proteins [BR:llv00536]
    125094828
Exosome [BR:llv04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   125094828
Glycosaminoglycan binding proteins [BR:llv00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   125094828
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 125094828
NCBI-ProteinID: XP_047576350
LinkDB
Position
3:198744023..198901212
AA seq 1711 aa
MDRHQCSASSPALRRWLLLGAVTVGLLAQSVLAGVKKFDVPCGGRDCSGGCQCYPEKGGR
GQPGPVGPQGYTGPPGLQGFPGLQGRKGDKGERGSPGITGPKGDVGARGVSGFPGADGIP
GHPGQGGPRGPPGYDGCNGTRGDVGQQGPAGPPGFHGPPGPQGPKGQKGEPYALSSVDRD
RYRGEPGEPGLVGFQGHPGRPGPIGQMGPVGAPGRPGPPGPPGPKGQPGNRGLGFYGEKG
EKGDIGLPGPNGIVWDFHPAVGPTKEMFHPEQYKGEKGSVGEPGVKGISLKGEEGVMGFS
GPRGAAGFDGEKGFPGQKGSRGPDGYQGPSGPPGPKGEAGDRGPPGPPAYFPHPSLAKGA
RGDPGFPGTHGEPGSRGEPGDPGPPGLRGTSVRDEDGKRGLPGEMGPKGFIGDPGIPALY
PGPPGTDGRPGLQGPPGPAGPPGPDGFLFGLKGTEGKVGYPGPSGFPGARGQKGWKGDAG
DCKCAEGDQFIRGLPGFPGPKGLPGINGEPGMKGSQGDPGQHGIPGFPGFKGAPGHVGPP
GPKGLKGDSRAVTTKGERGQPGVPGVPGLKGDDGVPGRDGLDGFPGLPGPPGDGIKGPPG
DSGYPGAPGTKGAAGDRGPQGLGLPGPKGERGFPGDAGLPGPPGFPGPPGPPGTPGQIDC
DTGVKRPIGGDGQETLQPGCVGGPKGSPGLPGPPGPTGVKGLQGTPGLSGADGPPGLKGL
PGDPGREGFPGPPGFVGPRGSKGAAGLPGADGLPGPTGLPGPIGPPGDRGLPGEVLGAQP
GPRGDAGVPGQPGLRGPPGERGPPGFRGSQGMPGMPGLKGQPGFPGPSGQPGLPGPPGQH
GFPGAPGREGPLGRPGAPGHGGLPGDRGDPGDTGVPGPVGMKGLSGDRGDPGLLGERGPP
GNPGFKGMSGMPGIPGQKGGRGSPGMDGFQGMVGLKGRPGLPGNKGEAGFYGIPGLKGLA
GEPGVKGSRGDPGPPGPPPIIQPGMKDIKGEKGDEGPMGLKGYLGLKGVPGMPGVPGLSG
VPGLPGKPGHIKGVKGDIGIPGVPGLPGFPGVPGPPGIIGFPGFTGSRGDKGAPGRAGLY
GEVGPTGDFGDIGDTVNLPGRPGLKGERGLAGGPGLKGFFGEKGTVGEVGFPGITGMPGV
QGPPGAKGQTGFPGLTGLQGPQGEPGRAGRPGNKGDFGRPGIPGSPGFPGIQGVSGLHGL
PGTKGFPGSPGVDIHGDPGFPGPTGDRGDPGEPNTRPGPFGAPGQKGERGDPGERGPIGS
PGLQGFPGVTPPSNVSGLPGDKGAPGIFGLEGYRGPPGPPGPAALPGSKGDEGNPGAPGN
PGTKGWGGDPGPQGRPGVFGLPGEKGPRGDPGFMGNTGATGSVGDRGPKGPKGDRGLPGA
PGSVGAPGIAGIPQRIAIQPGPVGPQGRRGPPGAQGEMGPQGPPGEPGFRGAPGKAGPQG
RGGVSAVPGFRGDQGPMGQQGPVGQEGEPGRPGAPGLPGMPGRSVSIGYLLVKHSQTDRE
PMCPVGMNKLWGGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRN
DKSYWLSTTAPLPMMPVAEDDIKPYISRCSVCEAPAIAIAVHSQDVSIPHCPAGWRSLWI
GYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYYANKYSFWLTTIPE
PSFQGAPSADTLKAGLIRTHISRCQVCMKNL
NT seq 5136 nt   +upstreamnt  +downstreamnt
atggacagacaccagtgctcggcgtccagccctgccctgcggcggtggctgctgctgggg
gctgtgaccgtggggctcctagcccagagcgtcctggcgggcgtgaagaagtttgacgtg
ccgtgtggagggagagactgcagcgggggctgccagtgctaccccgagaagggaggacgg
ggccagcccgggccagtgggcccccaggggtacaccggacccccaggactgcagggcttc
ccaggactgcagggccgcaaaggtgacaagggcgagcggggatcacccgggatcacagga
ccgaaaggagacgtgggagcgagaggtgtttctggattccctggagccgatggaattccc
ggacaccccggccaaggaggcccccgagggccacccggctatgacggctgcaacgggacc
agaggagacgtgggccagcagggacccgccggccccccgggcttccacggccctcccggg
ccccaaggacccaaaggacagaaaggcgagccctatgccctgtccagcgtggaccgcgac
agatacaggggggaacccggagagcctggtttggttggcttccagggccaccccggccgg
cctgggcctataggacagatgggtccagttggagctccaggaagaccgggcccgcctgga
ccccctggaccaaaaggacagccaggcaacagaggacttggcttttatggagaaaagggt
gaaaagggcgacatcggcctgccaggacccaacgggattgtgtgggatttccacccggcc
gtcggacccacgaaggagatgttccacccggagcagtataagggtgaaaaggggagtgtt
ggggagccaggagtaaaaggcatctccttgaagggagaagaaggagtcatgggtttctcg
ggcccgcggggtgctgccggcttcgacggcgagaaaggtttcccgggacagaaggggagc
agaggaccggacggttatcaaggccccagcggacccccaggacccaagggagaagcgggc
gaccgcggccccccaggccccccggcctacttccctcacccctccctcgctaaaggtgcc
cgaggtgacccaggattcccagggacccatggggaaccaggaagccggggtgaaccagga
gacccgggccccccgggcctccgcggcacatcagtcagagatgaagatgggaagagaggc
ttaccgggtgaaatgggccccaaaggcttcataggagaccccggcattcccgcactgtac
cccggcccgccgggcactgatggaaggccaggactccagggacccccagggcctgccgga
ccaccgggaccagatggtttccttttcggccttaaaggaacagaagggaaggtgggctac
cctgggccttctggcttccctggggctcgcggacagaaaggatggaaaggtgatgctggg
gactgtaagtgcgcggagggcgatcagttcatcaggggactcccggggttcccaggaccc
aagggccttcctggcatcaatggagagccaggaatgaaagggagccaaggagaccccggc
cagcacggcatccccgggttccccgggttcaagggcgcacctggccacgtgggacctccc
gggcccaaagggctgaagggggactcccgagcagtcaccaccaaaggtgagcggggacag
ccaggggtcccaggtgtgccggggctgaaaggtgacgacggtgtccccgggcgcgatggg
ctggatggattcccaggcctcccaggccctccgggcgatggcatcaaaggccccccaggg
gactcaggttacccaggagcaccgggcactaagggcgctgcaggagacaggggcccccaa
ggactgggcctccccggccccaaaggcgagcgtggtttccccggagacgctggattaccc
ggaccaccaggctttcccggtccccctggcccccctggcacccccggacaaatagactgt
gacacaggggtgaaaaggcccatcggaggtgacggacaggagaccttgcagccaggttgt
gtcggaggccccaagggatcgccaggcctgcctggacccccaggccccacaggggtcaag
ggcctccaagggacaccgggactctcgggagcagacggaccaccagggctcaagggtctc
cccggagacccaggtcgtgaaggattcccaggacccccagggttcgtggggccccgagga
tccaaaggtgcagcgggccttcctggtgcggacggtctcccgggtcccactggtctgccg
ggccccattgggcccccaggggacaggggcctgcccggagaagttctgggagcccaacct
gggccccgaggagatgctggagtgcctggacagcctggcctgagaggccctccgggagag
aggggcccacctggattcaggggaagccagggcatgccgggaatgccaggcctgaagggc
cagccgggcttcccaggaccatcgggccagccaggcctgcccgggccaccaggacagcac
ggcttcccaggagctccaggccgggaggggcccttggggcggccaggtgcccctggtcac
ggaggtctgcctggagacagaggggacccaggggacacaggtgtccctggccccgtgggc
atgaagggtctctctggcgatagaggtgaccctggtttgctgggagagagaggcccccca
ggaaatcctgggttcaaaggaatgagcggaatgcctggtatccccgggcagaaaggtggg
agaggttcgcccgggatggacggtttccaaggcatggtcgggctcaaaggaagacccggg
cttccgggaaacaaaggagaggccggattttatggaattccgggactgaagggcctggcg
ggggagccgggtgtgaaaggcagccgcggagaccccggacccccagggccacctcccatc
atccagccaggaatgaaggacatcaaaggggagaaaggcgatgaggggcccatggggctg
aaagggtacctgggcctgaaaggtgttcccggaatgccgggcgtccccgggctgtcggga
gtccccgggttgccagggaagccgggccacatcaaaggagtcaaaggagacattggcatc
cccggagtgccgggtttaccaggatttcccggcgtgcccggcccccccggcatcataggt
tttcccgggttcacaggaagtcggggcgacaagggagctccggggagagcgggcctgtat
ggcgaggtcggccccaccggtgacttcggtgacatcggagacaccgtcaatctgcccgga
aggcctggactgaaaggggagcggggcctggccgggggcccagggctgaagggcttcttc
ggggagaaaggaacagtgggcgaagtcggtttccccgggataacaggcatgcccggcgtc
caaggccctcccggagccaaagggcaaacaggcttcccaggactgacaggcctgcagggg
ccccagggagagccagggcgggcaggacggcctggtaacaaaggagacttcggccggccc
gggattccaggctccccaggttttcccggcatccaaggcgtcagcggcttgcacggcctg
ccaggcaccaaaggctttccgggatccccaggtgtggacatccacggcgaccccggcttc
cctggtcctacaggggacaggggtgacccaggagagcccaacacccgcccaggccctttc
ggagccccaggacagaaaggggagcgaggagacccaggggaacgaggccctatcgggagc
cccggacttcaggggttcccaggcgtcaccccaccttccaacgtgtctggcttacctggt
gacaaaggggcaccgggcatatttggcctagaaggttaccgagggcctcccgggccacct
gggcctgctgctcttcctggaagcaaaggagacgaggggaacccaggagctccgggaaac
cccgggaccaaaggatggggcggcgaccctgggccccagggccggcccggcgtgttcggt
ctcccgggagagaaagggcctagaggggacccaggattcatgggaaacacaggagccacc
gggagtgtgggcgaccgaggccctaagggacccaagggagaccgaggactcccaggtgcc
cccggttctgtgggagcccctgggattgcaggaattccccagaggattgccatccagcca
gggccagtgggtccacagggaaggagaggccccccgggggcgcaaggcgagatggggccc
cagggccccccaggagaaccaggtttccgcggggctcctgggaaggcagggccccagggg
agaggcggtgtgtctgctgtccccggattccgaggagaccaggggcccatgggacagcag
gggccggtgggccaggaaggggagccgggccgcccaggggcccccggcctgccaggcatg
ccgggccgcagcgtcagcatcggctacctgctggtgaagcacagccagacggaccgcgag
cccatgtgccctgtgggcatgaacaagctgtggggcgggtacagcctgctgtacttcgag
ggccaggagaaagcccacaaccaggacctggggctggcaggctcctgcctggctcggttc
agcaccatgcccttcctgtattgcaacccgggtgacgtgtgctactacgccagccggaat
gacaagtcctactggctgtccaccactgccccgctgcccatgatgcctgtggctgaggat
gacatcaagccctacatcagccgctgttccgtgtgtgaggccccagccatcgccatagca
gtgcacagccaagacgtctccatcccccactgcccagctggatggcggagtctgtggatt
ggatactccttcctcatgcacacggccgcgggcgacgagggcggtggccagtcgctggtg
tccccgggcagctgcctggaggacttccgcgccacgcccttcatcgagtgcaacgggggc
cgcgggacctgccactactacgccaacaagtacagcttctggctcaccaccatccccgag
cccagcttccagggcgcgccgtccgccgacaccctcaaggccgggctcatccgcacccac
atcagccgctgccaggtgtgcatgaagaacctgtga

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