Lutra lutra (Eurasian river otter): 125094828
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Entry
125094828 CDS
T08100
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04151
PI3K-Akt signaling pathway
llv04382
Cornified envelope formation
llv04510
Focal adhesion
llv04512
ECM-receptor interaction
llv04820
Cytoskeleton in muscle cells
llv04926
Relaxin signaling pathway
llv04933
AGE-RAGE signaling pathway in diabetic complications
llv04974
Protein digestion and absorption
llv05146
Amoebiasis
llv05165
Human papillomavirus infection
llv05200
Pathways in cancer
llv05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125094828
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125094828
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125094828
09142 Cell motility
04820 Cytoskeleton in muscle cells
125094828
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
125094828
09154 Digestive system
04974 Protein digestion and absorption
125094828
09158 Development and regeneration
04382 Cornified envelope formation
125094828
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
125094828
09162 Cancer: specific types
05222 Small cell lung cancer
125094828
09172 Infectious disease: viral
05165 Human papillomavirus infection
125094828
09174 Infectious disease: parasitic
05146 Amoebiasis
125094828
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
125094828
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
llv04147
]
125094828
00536 Glycosaminoglycan binding proteins [BR:
llv00536
]
125094828
Exosome [BR:
llv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125094828
Glycosaminoglycan binding proteins [BR:
llv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125094828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125094828
NCBI-ProteinID:
XP_047576350
LinkDB
All DBs
Position
3:198744023..198901212
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AA seq
1711 aa
AA seq
DB search
MDRHQCSASSPALRRWLLLGAVTVGLLAQSVLAGVKKFDVPCGGRDCSGGCQCYPEKGGR
GQPGPVGPQGYTGPPGLQGFPGLQGRKGDKGERGSPGITGPKGDVGARGVSGFPGADGIP
GHPGQGGPRGPPGYDGCNGTRGDVGQQGPAGPPGFHGPPGPQGPKGQKGEPYALSSVDRD
RYRGEPGEPGLVGFQGHPGRPGPIGQMGPVGAPGRPGPPGPPGPKGQPGNRGLGFYGEKG
EKGDIGLPGPNGIVWDFHPAVGPTKEMFHPEQYKGEKGSVGEPGVKGISLKGEEGVMGFS
GPRGAAGFDGEKGFPGQKGSRGPDGYQGPSGPPGPKGEAGDRGPPGPPAYFPHPSLAKGA
RGDPGFPGTHGEPGSRGEPGDPGPPGLRGTSVRDEDGKRGLPGEMGPKGFIGDPGIPALY
PGPPGTDGRPGLQGPPGPAGPPGPDGFLFGLKGTEGKVGYPGPSGFPGARGQKGWKGDAG
DCKCAEGDQFIRGLPGFPGPKGLPGINGEPGMKGSQGDPGQHGIPGFPGFKGAPGHVGPP
GPKGLKGDSRAVTTKGERGQPGVPGVPGLKGDDGVPGRDGLDGFPGLPGPPGDGIKGPPG
DSGYPGAPGTKGAAGDRGPQGLGLPGPKGERGFPGDAGLPGPPGFPGPPGPPGTPGQIDC
DTGVKRPIGGDGQETLQPGCVGGPKGSPGLPGPPGPTGVKGLQGTPGLSGADGPPGLKGL
PGDPGREGFPGPPGFVGPRGSKGAAGLPGADGLPGPTGLPGPIGPPGDRGLPGEVLGAQP
GPRGDAGVPGQPGLRGPPGERGPPGFRGSQGMPGMPGLKGQPGFPGPSGQPGLPGPPGQH
GFPGAPGREGPLGRPGAPGHGGLPGDRGDPGDTGVPGPVGMKGLSGDRGDPGLLGERGPP
GNPGFKGMSGMPGIPGQKGGRGSPGMDGFQGMVGLKGRPGLPGNKGEAGFYGIPGLKGLA
GEPGVKGSRGDPGPPGPPPIIQPGMKDIKGEKGDEGPMGLKGYLGLKGVPGMPGVPGLSG
VPGLPGKPGHIKGVKGDIGIPGVPGLPGFPGVPGPPGIIGFPGFTGSRGDKGAPGRAGLY
GEVGPTGDFGDIGDTVNLPGRPGLKGERGLAGGPGLKGFFGEKGTVGEVGFPGITGMPGV
QGPPGAKGQTGFPGLTGLQGPQGEPGRAGRPGNKGDFGRPGIPGSPGFPGIQGVSGLHGL
PGTKGFPGSPGVDIHGDPGFPGPTGDRGDPGEPNTRPGPFGAPGQKGERGDPGERGPIGS
PGLQGFPGVTPPSNVSGLPGDKGAPGIFGLEGYRGPPGPPGPAALPGSKGDEGNPGAPGN
PGTKGWGGDPGPQGRPGVFGLPGEKGPRGDPGFMGNTGATGSVGDRGPKGPKGDRGLPGA
PGSVGAPGIAGIPQRIAIQPGPVGPQGRRGPPGAQGEMGPQGPPGEPGFRGAPGKAGPQG
RGGVSAVPGFRGDQGPMGQQGPVGQEGEPGRPGAPGLPGMPGRSVSIGYLLVKHSQTDRE
PMCPVGMNKLWGGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRN
DKSYWLSTTAPLPMMPVAEDDIKPYISRCSVCEAPAIAIAVHSQDVSIPHCPAGWRSLWI
GYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYYANKYSFWLTTIPE
PSFQGAPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atggacagacaccagtgctcggcgtccagccctgccctgcggcggtggctgctgctgggg
gctgtgaccgtggggctcctagcccagagcgtcctggcgggcgtgaagaagtttgacgtg
ccgtgtggagggagagactgcagcgggggctgccagtgctaccccgagaagggaggacgg
ggccagcccgggccagtgggcccccaggggtacaccggacccccaggactgcagggcttc
ccaggactgcagggccgcaaaggtgacaagggcgagcggggatcacccgggatcacagga
ccgaaaggagacgtgggagcgagaggtgtttctggattccctggagccgatggaattccc
ggacaccccggccaaggaggcccccgagggccacccggctatgacggctgcaacgggacc
agaggagacgtgggccagcagggacccgccggccccccgggcttccacggccctcccggg
ccccaaggacccaaaggacagaaaggcgagccctatgccctgtccagcgtggaccgcgac
agatacaggggggaacccggagagcctggtttggttggcttccagggccaccccggccgg
cctgggcctataggacagatgggtccagttggagctccaggaagaccgggcccgcctgga
ccccctggaccaaaaggacagccaggcaacagaggacttggcttttatggagaaaagggt
gaaaagggcgacatcggcctgccaggacccaacgggattgtgtgggatttccacccggcc
gtcggacccacgaaggagatgttccacccggagcagtataagggtgaaaaggggagtgtt
ggggagccaggagtaaaaggcatctccttgaagggagaagaaggagtcatgggtttctcg
ggcccgcggggtgctgccggcttcgacggcgagaaaggtttcccgggacagaaggggagc
agaggaccggacggttatcaaggccccagcggacccccaggacccaagggagaagcgggc
gaccgcggccccccaggccccccggcctacttccctcacccctccctcgctaaaggtgcc
cgaggtgacccaggattcccagggacccatggggaaccaggaagccggggtgaaccagga
gacccgggccccccgggcctccgcggcacatcagtcagagatgaagatgggaagagaggc
ttaccgggtgaaatgggccccaaaggcttcataggagaccccggcattcccgcactgtac
cccggcccgccgggcactgatggaaggccaggactccagggacccccagggcctgccgga
ccaccgggaccagatggtttccttttcggccttaaaggaacagaagggaaggtgggctac
cctgggccttctggcttccctggggctcgcggacagaaaggatggaaaggtgatgctggg
gactgtaagtgcgcggagggcgatcagttcatcaggggactcccggggttcccaggaccc
aagggccttcctggcatcaatggagagccaggaatgaaagggagccaaggagaccccggc
cagcacggcatccccgggttccccgggttcaagggcgcacctggccacgtgggacctccc
gggcccaaagggctgaagggggactcccgagcagtcaccaccaaaggtgagcggggacag
ccaggggtcccaggtgtgccggggctgaaaggtgacgacggtgtccccgggcgcgatggg
ctggatggattcccaggcctcccaggccctccgggcgatggcatcaaaggccccccaggg
gactcaggttacccaggagcaccgggcactaagggcgctgcaggagacaggggcccccaa
ggactgggcctccccggccccaaaggcgagcgtggtttccccggagacgctggattaccc
ggaccaccaggctttcccggtccccctggcccccctggcacccccggacaaatagactgt
gacacaggggtgaaaaggcccatcggaggtgacggacaggagaccttgcagccaggttgt
gtcggaggccccaagggatcgccaggcctgcctggacccccaggccccacaggggtcaag
ggcctccaagggacaccgggactctcgggagcagacggaccaccagggctcaagggtctc
cccggagacccaggtcgtgaaggattcccaggacccccagggttcgtggggccccgagga
tccaaaggtgcagcgggccttcctggtgcggacggtctcccgggtcccactggtctgccg
ggccccattgggcccccaggggacaggggcctgcccggagaagttctgggagcccaacct
gggccccgaggagatgctggagtgcctggacagcctggcctgagaggccctccgggagag
aggggcccacctggattcaggggaagccagggcatgccgggaatgccaggcctgaagggc
cagccgggcttcccaggaccatcgggccagccaggcctgcccgggccaccaggacagcac
ggcttcccaggagctccaggccgggaggggcccttggggcggccaggtgcccctggtcac
ggaggtctgcctggagacagaggggacccaggggacacaggtgtccctggccccgtgggc
atgaagggtctctctggcgatagaggtgaccctggtttgctgggagagagaggcccccca
ggaaatcctgggttcaaaggaatgagcggaatgcctggtatccccgggcagaaaggtggg
agaggttcgcccgggatggacggtttccaaggcatggtcgggctcaaaggaagacccggg
cttccgggaaacaaaggagaggccggattttatggaattccgggactgaagggcctggcg
ggggagccgggtgtgaaaggcagccgcggagaccccggacccccagggccacctcccatc
atccagccaggaatgaaggacatcaaaggggagaaaggcgatgaggggcccatggggctg
aaagggtacctgggcctgaaaggtgttcccggaatgccgggcgtccccgggctgtcggga
gtccccgggttgccagggaagccgggccacatcaaaggagtcaaaggagacattggcatc
cccggagtgccgggtttaccaggatttcccggcgtgcccggcccccccggcatcataggt
tttcccgggttcacaggaagtcggggcgacaagggagctccggggagagcgggcctgtat
ggcgaggtcggccccaccggtgacttcggtgacatcggagacaccgtcaatctgcccgga
aggcctggactgaaaggggagcggggcctggccgggggcccagggctgaagggcttcttc
ggggagaaaggaacagtgggcgaagtcggtttccccgggataacaggcatgcccggcgtc
caaggccctcccggagccaaagggcaaacaggcttcccaggactgacaggcctgcagggg
ccccagggagagccagggcgggcaggacggcctggtaacaaaggagacttcggccggccc
gggattccaggctccccaggttttcccggcatccaaggcgtcagcggcttgcacggcctg
ccaggcaccaaaggctttccgggatccccaggtgtggacatccacggcgaccccggcttc
cctggtcctacaggggacaggggtgacccaggagagcccaacacccgcccaggccctttc
ggagccccaggacagaaaggggagcgaggagacccaggggaacgaggccctatcgggagc
cccggacttcaggggttcccaggcgtcaccccaccttccaacgtgtctggcttacctggt
gacaaaggggcaccgggcatatttggcctagaaggttaccgagggcctcccgggccacct
gggcctgctgctcttcctggaagcaaaggagacgaggggaacccaggagctccgggaaac
cccgggaccaaaggatggggcggcgaccctgggccccagggccggcccggcgtgttcggt
ctcccgggagagaaagggcctagaggggacccaggattcatgggaaacacaggagccacc
gggagtgtgggcgaccgaggccctaagggacccaagggagaccgaggactcccaggtgcc
cccggttctgtgggagcccctgggattgcaggaattccccagaggattgccatccagcca
gggccagtgggtccacagggaaggagaggccccccgggggcgcaaggcgagatggggccc
cagggccccccaggagaaccaggtttccgcggggctcctgggaaggcagggccccagggg
agaggcggtgtgtctgctgtccccggattccgaggagaccaggggcccatgggacagcag
gggccggtgggccaggaaggggagccgggccgcccaggggcccccggcctgccaggcatg
ccgggccgcagcgtcagcatcggctacctgctggtgaagcacagccagacggaccgcgag
cccatgtgccctgtgggcatgaacaagctgtggggcgggtacagcctgctgtacttcgag
ggccaggagaaagcccacaaccaggacctggggctggcaggctcctgcctggctcggttc
agcaccatgcccttcctgtattgcaacccgggtgacgtgtgctactacgccagccggaat
gacaagtcctactggctgtccaccactgccccgctgcccatgatgcctgtggctgaggat
gacatcaagccctacatcagccgctgttccgtgtgtgaggccccagccatcgccatagca
gtgcacagccaagacgtctccatcccccactgcccagctggatggcggagtctgtggatt
ggatactccttcctcatgcacacggccgcgggcgacgagggcggtggccagtcgctggtg
tccccgggcagctgcctggaggacttccgcgccacgcccttcatcgagtgcaacgggggc
cgcgggacctgccactactacgccaacaagtacagcttctggctcaccaccatccccgag
cccagcttccagggcgcgccgtccgccgacaccctcaaggccgggctcatccgcacccac
atcagccgctgccaggtgtgcatgaagaacctgtga
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