Lutra lutra (Eurasian river otter): 125095149
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Entry
125095149 CDS
T08100
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04151
PI3K-Akt signaling pathway
llv04382
Cornified envelope formation
llv04510
Focal adhesion
llv04512
ECM-receptor interaction
llv04820
Cytoskeleton in muscle cells
llv04926
Relaxin signaling pathway
llv04933
AGE-RAGE signaling pathway in diabetic complications
llv04974
Protein digestion and absorption
llv05146
Amoebiasis
llv05165
Human papillomavirus infection
llv05200
Pathways in cancer
llv05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125095149
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125095149
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125095149
09142 Cell motility
04820 Cytoskeleton in muscle cells
125095149
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
125095149
09154 Digestive system
04974 Protein digestion and absorption
125095149
09158 Development and regeneration
04382 Cornified envelope formation
125095149
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
125095149
09162 Cancer: specific types
05222 Small cell lung cancer
125095149
09172 Infectious disease: viral
05165 Human papillomavirus infection
125095149
09174 Infectious disease: parasitic
05146 Amoebiasis
125095149
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
125095149
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
llv04147
]
125095149
00536 Glycosaminoglycan binding proteins [BR:
llv00536
]
125095149
Exosome [BR:
llv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125095149
Glycosaminoglycan binding proteins [BR:
llv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125095149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125095149
NCBI-ProteinID:
XP_047577117
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All DBs
Position
3:complement(36266738..36388903)
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AA seq
1688 aa
AA seq
DB search
MHMASVRCSFRWIKPLATDPWSLMFILFSVQHVYGSGKKFVGPCGGRDCAVCQCFPEKGS
RGQPGPPGPQGPIGHLGMPGPIGIPGEKGMRGDSGPPGVPGDKGDRGPTGVPGFPGLDGI
PGHPGPPGSRGKPGIHGYNGSRGDPGFPGERGVPGPRGPPGLPGENGEKGNSVFILGAIK
GIQGDRGDPGPPGLPGLRGARGPAGPMGHPGEPGLAGAPGHPGRPGLKGNPGVGVKGQVG
DPGEVGPQGSPGPTLLVQPPDSCLYKGEKGVKGMPGMTGRPGPPGPKGEPGIGAKGEKGI
PGFSGPRGDPGSHGSPGFPGLKGEPGLFGEPGSFGFLGPKGDPGDRGYPGPPGVLVTPPL
PLKGPPGDPGRPGRYGEMGSVGPPGPPGPSGPPGEAYAGMMGPPGPRGFPGHPGFPGAAG
TPGIADFSPGKPGKPGPPGLPGAPGLQGPPGSDVIYCSVGHPGPQGIKGKMGPPGRRGSK
GEKGDAGLCACEPGPMGPPGPPGLPGRQGSKGDLGLPGWLGEKGHPGPPGAEGSPGPPGK
HGVSGPPGSKGEKGDVVVSRVKGQKGERGPDGLPGFPGQQGQHGGDGLPGKRGDPGPPGD
HEDALPGDKGFPGPPGPPGRAGPRGQPGLGFPGPPGERGPPGAPGHPGERGLEGLKGQKG
DTISCNITYPGRPGPPGIDGPPGPKGFPGLRGTPGLRCFDGQKGRRGKPGISEIPGPPGF
RGDMGDPGFGGEKGSSLLGPPGFPGSHGANGQKGVMGDTAYGQPGAPGKRGLSGVPGSKG
HRGVPGHPGFEGAAGRPGFPGLKGPRGREGSAGFPGIPGLPARSCKGGAPGLPGQPGLRG
APGHPGAPGWKGQQGDMGPPGPAGMKGLPGVPGWPGADGPLGPPGIPGPSGDDGLPGLPG
PKGSQGLPGFPGFPGERGKPGSDGRAGSKGDPGEDGQPGFPGDRGVKGAKGARGPPGDEG
EMAIISQKGKTGEPGPPGDGGFPGEEGDKGDPGMQGRRGEPGRHGPPGFHRGEPGRTGQP
GLPGSPGPPGSPGPRGIIGFPGFPGDQGEPGSPGSPGRSGIDGMRGPKGDKGDPASQFGF
PGPKGEPGGPGCPGHPGVPGDQGLPGVQGPTGPPGRPGLPGAFGPPGCPGTQGAPGLQGP
PGETGDPGPRGMVGDPGAPGLPGIKGPSGAPGLNGLHGLKGQKGAKGASGLHEVGPPGPV
GTPGLKGAMGDPGSPGISPPGPSGGRGPPGPPGRPGLPGLAGATGRAPEGDIPDPGPPGD
QGPPGPDGPRGAPGPPGLPGSVDLLKGEPGDCGLPGPPGPPGPPGPPGRKGFPGCDGKDG
QKGPMGFPGLQGPQGLPGSPGEKGLPGIPGRRGHPGLPGSRGEPGPPADVESCPRIPGLP
GVPGPRGPEGAMGVPGVRGPPGPGCKGESGPDGRRGKDGLPGPPGPPGSKGDAGEAGCPG
APGPPGPIGDPGPKGFRPGYLSGFLLVLHSQTDREPACPAGMPQLWTGYSLLYLEGQEKA
HSQDLGLAGSCLPVFSTLPFTYCNIHQVCHYGRRNDRSYWLASAAPLPMTPLSEEEIRPY
ISRCAVCEAPAPVVALHSQDQSIPPCPRTWRSLWIGYSFLMHTGAGDQGGGQALMSPGSC
LEDFRAAPFLECQGRQGTCHFFANKYSFWLTTVRADLQFSSAPTPDTLKESQAQRQRISR
CQVCMKYS
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgcacatggcgtcagtaaggtgctcattcaggtggatcaaacccttggccacagatccc
tggtcacttatgttcatcctcttttctgtacaacatgtatatgggagtggaaagaagttt
gtgggtccttgcggaggaagagattgcgcagtgtgccagtgctttcctgaaaaagggtct
cggggtcagccaggacctccggggccacaaggtcctattggacacctgggaatgccagga
cccattggaattccaggagagaaagggatgagaggtgacagtggtcctcctggagtgcca
ggtgacaaaggtgataggggtccaactggtgttcctggatttccaggtttggatggtata
cctgggcacccaggacctcctggatccagaggcaagcctggcatacatggctataatggt
tcacgaggtgatccagggtttccaggagaaagaggagttcctggcccaaggggcccccca
ggtcttcctggggaaaatggagaaaaaggaaactcagtgttcattttaggtgccattaaa
ggtattcagggcgacagaggggacccaggacctcctggcttgccgggattgaggggggca
agaggaccagcgggcccaatgggacatccaggagagcccgggttagctggtgctccaggc
catcctgggagaccgggcttgaagggtaatcctggcgtgggagtcaaggggcaagtggga
gacccgggtgaagttggcccgcaaggttctcctggacccaccttattggtacagccacct
gattcttgtctgtataaaggagaaaagggcgtaaaaggaatgcctggtatgactggacgt
ccaggaccaccaggacccaagggagaacctggaattggggcaaaaggagagaagggtatc
cctgggttctcaggacctcggggtgatcctggttcccacggatctccaggttttccagga
ttaaagggggaaccaggactgtttggggagcctggatcatttggatttcttggcccaaag
ggggatcctggagaccgcgggtacccaggaccaccgggggttttggtaaccccacctctt
ccactcaaaggccctcctggggatccggggcgccctggccgctatggagaaatggggtct
gttggaccacctggtccccccggcccctccggtccaccaggggaagcctatgcaggcatg
atgggaccccctgggccaagagggtttcctggtcatccgggatttccaggggcagctggt
acccctgggatagctgatttcagtccaggaaagccagggaagccaggaccaccagggttg
cctggagccccagggctgcagggccctccgggatcagacgttatatattgtagtgttggg
caccctggaccacaaggaataaaaggcaaaatgggtcctccaggaagaagaggctcaaaa
ggagaaaaaggagacgcggggctctgtgcctgtgagcctggtcccatgggcccacctggc
cctccggggcttcctgggaggcagggtagtaagggagacttggggctccctgggtggctt
ggagagaaaggtcacccaggccctcctggtgcagaaggatctccaggaccaccaggaaaa
catggtgtttcaggaccacctggcagcaaaggagaaaagggcgatgtggtcgtatcaaga
gtgaaagggcagaaaggagaaagaggtcctgatgggctcccaggatttccaggacagcag
ggacaacatggcggggatggacttcctggaaaaaggggggatccaggccctccaggggat
catgaagatgcactcccaggtgataaagggtttcctggacccccaggtcccccgggcaga
gcaggacctagaggacaaccaggtctgggatttcctggcccaccgggagagagagggcca
ccaggagctccaggccaccccggtgagaggggcctcgaaggcttgaagggtcagaaaggc
gatacaatttcttgtaacatcacctaccctgggaggccaggtcccccaggaattgatgga
cctccaggacccaagggatttccaggtcttcggggcactccggggttgaggtgtttcgat
gggcaaaaaggtcggcgtggcaagccaggaatatcagaaataccgggtccacctggtttt
cgtggtgacatgggcgatccgggttttggaggtgaaaaggggtcctcccttctggggccc
ccaggcttccctggttctcatggagcaaatggtcagaaaggagtcatgggagacactgcc
tatggccaaccaggtgctccaggaaagagaggtctttcaggagtgccagggtcaaaaggt
cacagaggtgttccaggacatccaggctttgaaggggcagctggcaggccgggattccca
ggtcttaaaggccccagaggcagagagggaagtgctgggtttccaggaatcccaggtcta
cctgctcgttcctgcaaaggaggtgccccagggttaccggggcagccgggactccgaggg
gctccaggccacccaggtgccccaggttggaaaggacagcaaggggacatggggcctcct
ggtccagctggaatgaagggcctccctggagtcccgggatggccaggggcagacggtccc
ctaggacccccaggcatcccaggcccctcaggggatgacggactgcctggtcttccaggc
ccaaagggatcccaggggctgcctggcttccctggttttccgggggaaagaggaaagcct
ggctccgatggacgtgctggcagtaagggggacccaggagaggacggtcagcctggcttc
cctggagaccggggggtgaaaggtgccaaaggagcgagaggacctccaggagatgaagga
gagatggctatcatttcccaaaaggggaaaacgggcgaacctggacctccaggagatggt
ggattcccaggagaggaaggtgataaaggcgatcctgggatgcaggggaggagaggagag
cccggaagacacggaccacctggatttcacagaggggagcctggtagaactgggcagcca
gggcttccaggctccccaggccccccaggctcacctggtccaagagggattattggtttt
ccaggatttccaggtgaccagggtgagccgggttctccagggtccccaggacgttcggga
attgatggaatgagaggacctaaaggagacaaaggtgaccctgcaagtcagttcggcttc
cctggtccaaagggtgaaccaggtggccctggatgtccaggacatcccggagtacccggc
gatcagggcttgcctggtgttcaaggccccacaggaccaccaggaaggccaggattacct
ggtgcctttggaccacccgggtgtccaggtactcaaggggcgcctgggctgcagggacct
ccaggagaaacgggggatcctgggccaagaggcatggtgggagatccaggggcaccgggg
ctcccaggaataaaaggtccctccggggcgcccggtctgaacggcttgcatggtttaaag
ggtcagaaaggagccaaaggcgcttcaggtttacacgaagtgggcccacctggtccagtg
ggcacacccgggctaaaaggggcgatgggagaccctgggagtccaggaatttctccccca
ggcccttctggaggaagaggtccccccggccccccagggagacctggattacctggtctg
gcaggtgccacaggaagagctcctgaaggggacattcctgacccaggtccacccggagat
cagggacctcctggccccgacggtccaagaggagcgcctgggcccccaggcctccctgga
agtgtcgaccttctgaaaggggaaccaggagactgtggtctgccaggacctccaggtccc
ccgggcccacccggccctccaggacgcaaaggcttcccaggatgtgatggaaaagatggc
cagaaaggaccaatggggttcccagggctgcaggggccacaaggacttcctggctccccc
ggggagaagggtttacctggcattccaggcagacgagggcaccccggtcttccaggctcc
agaggagaaccagggccgcctgccgatgtggagtcctgccctcgaatccctgggcttccc
ggggtaccaggcccgagaggaccagaaggagccatgggggtccctggagtgagagggccc
ccgggaccagggtgcaaaggagagtctgggccggatggtaggcggggcaaggatggcctc
ccagggccccctgggcctcctggaagcaaaggggacgcgggagaagccggctgccctgga
gcaccaggccctcctgggcccattggggaccctgggcccaaagggtttcgtcctggatac
ctcagcggcttcctcctggttctccacagtcagacggacagagaacctgcctgccctgcg
ggcatgccccagctctggacgggctacagcctcttatacctggaaggacaggagaaggcg
cacagtcaagaccttgggctggcagggtcttgccttcccgtgttcagcacgctgccgttc
acctattgcaacatccaccaagtgtgccactacggccggaggaacgaccggtcctactgg
ctggcgagtgccgcgccgctgcccatgaccccgctgtcagaggaggagatccgcccatac
atcagccgctgtgcggtgtgcgaggccccggcgcccgtggtggcactgcacagccaggac
cagtccatccccccgtgcccgcggacctggaggagcctgtggatcgggtactcgttcctg
atgcacacgggggccggggaccagggaggagggcaagccctcatgtcccctggcagctgt
ctggaagatttccgagctgcgccgttcctcgaatgccaaggccgccagggaacttgccat
ttttttgccaacaagtatagcttctggctgacgaccgtgagagccgacttgcagttttca
tctgcaccgacaccggacaccttaaaggagagccaggcccagcgccagaggatcagcagg
tgccaggtgtgcatgaagtacagctag
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