Lutra lutra (Eurasian river otter): 125095151
Help
Entry
125095151 CDS
T08100
Name
(RefSeq) collagen alpha-3(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04151
PI3K-Akt signaling pathway
llv04382
Cornified envelope formation
llv04510
Focal adhesion
llv04512
ECM-receptor interaction
llv04820
Cytoskeleton in muscle cells
llv04926
Relaxin signaling pathway
llv04933
AGE-RAGE signaling pathway in diabetic complications
llv04974
Protein digestion and absorption
llv05146
Amoebiasis
llv05165
Human papillomavirus infection
llv05200
Pathways in cancer
llv05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125095151
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125095151
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125095151
09142 Cell motility
04820 Cytoskeleton in muscle cells
125095151
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
125095151
09154 Digestive system
04974 Protein digestion and absorption
125095151
09158 Development and regeneration
04382 Cornified envelope formation
125095151
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
125095151
09162 Cancer: specific types
05222 Small cell lung cancer
125095151
09172 Infectious disease: viral
05165 Human papillomavirus infection
125095151
09174 Infectious disease: parasitic
05146 Amoebiasis
125095151
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
125095151
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
llv04147
]
125095151
00536 Glycosaminoglycan binding proteins [BR:
llv00536
]
125095151
Exosome [BR:
llv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125095151
Glycosaminoglycan binding proteins [BR:
llv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125095151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125095151
NCBI-ProteinID:
XP_047577128
LinkDB
All DBs
Position
3:36388442..36525796
Genome browser
AA seq
1670 aa
AA seq
DB search
MRPGTAAPRPPVLLRLLLLVLLAAAPTTGKGCVCKDKGQCFCDGIKGEKGEKGFPGPAGS
PGQKGFPGPEGLPGPQGPKGSPGLPGFTGPKGVRGITGLPGFSGPPGLPGTPGHPGPYGP
AGVPGCNGSKGERGFPGLPGTPGYPGIPGAIGLKGEKGAPAAEDIELDGRGDPGFPGVPG
FQGLPGLPGFPGPVGPPGPPGFLGFPGPMGPPGPKGHMGDNVIGQKGEQGVKGLTGPPGP
PGTVIVTLTGPDNRTNLKGEKGDKGAMGKSGPPGPSGPPGESYGSQKGAPGEPGPQGKPG
KDGAPGFPGTEGAKGNRGFPGLQGEDGIKGWKGDIGPPGFRGPTEYYDAYQEKGDEGLPG
PPGPKGARGPQGPRGSPGVPGIAGSSRPGLRGAPGPPGVKGSKGERGPPGKNAVGPPGSP
GCPGSPGPIGLPGYPGPPGDIVFRKGPPGSGGFPGLIGFPGIPGADGPKGEPGLLCIQCP
YIPGPPGLPGLPGLDGIKGIPGGQGAAGIKGSPGSPGSAGLPGSPGFPGAPGDPGLKGEK
GEASQPEGEVGAPGDPGLRGHPGRRGLDGIPGTPGIKGSPGPKGEPALSGEKGDQGPLGD
PGIPGSPGPAGPPGPANYGPRGEPGPKGNQGVPGAPGPPGEAGPKGEFSISTPVPGPPGP
PGPPGRAGPQGPPGIPGSRGKCDPGLPGPDGEPGIPGIGFPGPPGPKGEQGSPGVKGAPG
CPGEMGKPGPPGEPGLPGAKGEPGLAMPGQPGTPGFPGERGISGENGEIGFPGPPGLPGI
PGTGGVGGPQGDPGKPGPPGEKGPPGRCTEGPRGAQGLPGLNGLEGQPGRRGETGPKGDP
GIPGLDRSGFPGEPGPPGMPGHRGAMGPPGQTGYPGNPGFLGPPGEKGMMGMMGYPGDTG
PPGPPGNPGAPGQRGSFGIPGAKGEKGPPGTKGEEGDKGPRGPSQISTLLGDKGEPGLKG
FAGKPGEKGNRGIPGLPGLKGPEGPPGPPGPPGPRGDSGSVGNPGQPGPHGGPGSMGNMG
VPGPKGHRGALGLPGLTGRPGLPGVHGLRGDKGEPGYSAGTRPGPPGPKGDPGLPGDMGR
KGERGLPGTPGHLGPAGTEGAPGNPGSPGHPGKPGPDGDLGLKGIKGFPGSPGVKGPPGP
PGYPGPPGPMGMRGSQGRDGIPGPAGEKGETGLLGAPPGPRGSPGVPGAKGDRGAPGLPG
LPGRKGAVGDTGPRGPTGIMGLPGPPGFPGAIIPGQKGNRGPPGFRGNPGEPGPPGPPGS
HVRGIKGDKGIMGEPGPRGLPGTIGAEGPPGPPGAPGSPGLPGLRGDPGFHGFPGVKGEK
GNPGFLGPAGPPGQIGPKGPPGVRGDPGTVKIISLPGSPGPPGRAGGPGMQGEPGPPGPP
GILGPCGPRGKPGKDGRPGTPGPIGEKGNKGCKGEKGPPGSDGLPGLKGKPGHIGPPATE
PMRRGFVFTRHSQTTAIPSCPEGTEPLYSGFSLLFVQGNEQAHGQDLGTLGSCLQRFTTM
PFLFCNINDVCNFASRNDYSYWLSTPAPMPMDMAPITGRALEPYISRCTVCEGPTNAIAI
HSQTTAIPSCPNGWISLWKGFSFIMFTSAGSEGAGQALASPGSCLEEFRASPFIECHGRG
TCNYYSNSYSFWLASLNPQRMFRKPIPSTVKAGELENIISRCRVCMKRRQ
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccgggactgctgcgcccaggccgcccgtgttgctgcggctgctcctgctggtg
ctcctggcagcggcaccaacgacaggcaagggctgtgtctgtaaagacaaaggccagtgc
ttctgtgatgggatcaaaggggagaagggggagaaaggctttcctggacctgctggttct
cctggccagaagggattcccaggtcccgaaggcttgcctggaccacagggacccaagggc
tcaccaggactcccaggattcactggtcccaaaggtgtgaggggaataacaggattgccg
ggattttcaggtcctcctggacttccaggcaccccgggccatcctgggccctatggacct
gccggtgtcccaggatgcaatggttctaagggtgagcgagggtttccaggccttccgggg
acaccagggtacccggggatcccgggtgctattggtttgaaaggagaaaagggtgcccct
gctgcagaagatatagaacttgatggaagaggtgaccctgggtttccaggagttccggga
ttccagggtttgccaggccttccaggctttccgggacctgttggtccacctggccctcca
ggattcttaggctttccaggacccatgggacctccaggacctaagggtcacatgggcgat
aatgtgataggacaaaaaggagagcagggtgtaaaaggattaacaggaccccctggacca
ccaggaacggttattgtgacactaaccggcccggataacagaacgaacctcaaaggggag
aagggagacaagggagccatggggaaatctggacctcctggaccctcgggaccgcctgga
gaatcttatggatctcaaaagggtgctcctggagaacctggcccgcagggaaaacctggc
aaagatggtgcccctggtttccccggcactgagggagccaaaggcaacaggggcttccct
gggttacagggtgaagacggcattaaggggtggaaaggggacattggccctccaggattt
cgtggtccaacagaatattatgatgcataccaggaaaaaggagatgaaggacttccaggc
ccaccaggccctaaaggagctcgtggcccacaaggtccccgtggctctcctggggttcct
ggaattgctgggtcatcaaggcctggcctcagaggagcccctggacctccaggcgtgaaa
ggaagtaaaggggaacgagggcccccaggaaagaatgcagtggggcctcccgggtccccg
ggttgtcctggctcgccaggacctatagggttgccgggatatccaggaccaccaggtgac
atcgtttttcgcaaaggtccacctggaagtggtggattcccaggccttatagggtttcca
ggaatcccaggagctgatggtcccaaaggggaacctggcctcttgtgcatacagtgtcct
tatatccccgggcccccgggcctcccaggactgccagggttggacggcataaaaggaatc
ccaggaggccaaggggcagctggcattaaaggaagcccagggtccccgggaagtgcgggt
cttccaggatctccaggattcccgggtgctccgggggatccaggacttaaaggagaaaaa
ggtgaagcgtcgcagcctgagggagaagtgggtgccccaggggaccctgggctcagaggg
catcctggaagaaggggcttggacggaattcctggaactcccgggatcaaaggatcacca
ggacccaaaggtgaaccggccctgagtggtgagaagggggaccagggtcctctgggggat
cctggcatccctgggtccccaggacctgcaggaccacctggaccagcaaactatggacca
cggggagaacctggtccaaagggcaaccaaggagttcctggagcccctggaccacctgga
gaagccggtcctaagggagaattcagtatttcgacaccagtcccagggccaccaggacct
ccagggccccctggccgtgctggcccccaaggcccacccggtatccctggatccagagga
aaatgtgatccgggtcttcctgggcctgatggtgaaccaggaattccaggaatcggcttc
cctgggccccctggacctaagggagagcaaggttctcctggagtaaaaggagcaccaggt
tgtccaggagaaatggggaagcccgggccacccggagaaccaggtctcccaggagcgaag
ggagaaccaggactagccatgcctggacaaccaggaacaccaggttttccaggagaaaga
ggcatttctggggaaaatggagaaattggattccctggacctccaggtctccctggaatt
ccaggaactggaggggttggtggaccccaaggggatccagggaagcccggaccacctgga
gaaaaaggacccccaggaaggtgcacagaaggtcccaggggagcccaaggacttccagga
ttaaatggattggaagggcaaccgggcagaagaggtgaaacagggccaaagggagaccca
ggtattccaggcttggataggtcaggctttcctggagaacctggaccaccaggaatgcca
ggtcatcgaggtgcaatgggaccacctggtcaaacaggatatccaggaaatccaggattt
ttaggaccaccaggtgaaaaaggaatgatgggaatgatgggctatccaggagatactggc
cctcctgggccccctgggaacccaggcgccccaggacagaggggtagctttggaattcca
ggagcaaagggtgagaaagggcccccaggaaccaagggggaagaaggagataaagggcct
cgggggccttctcagatatccactttgctgggggacaaaggagaaccaggcctcaaagga
tttgctggaaagcctggtgaaaaaggaaacagaggcattccagggttaccaggtttaaaa
ggaccggaaggaccacctggaccaccaggtccaccaggccccagaggggattcaggcagc
gttgggaatcctggacaaccaggaccacatggtgggccaggaagcatgggcaacatgggg
gtgccaggtcctaaaggacacaggggagctttgggactaccaggtttaaccggaagaccg
ggtctcccgggtgttcacggtctccgaggagataagggagagccaggttattcggcaggt
acaaggccaggaccaccgggaccaaagggagatccaggattgccaggtgacatgggaagg
aaaggagaaagagggctacctggcacccctggacatttggggcctgctggaactgaggga
gcccctggaaatcccgggagtcctggccacccaggaaagccgggccctgatggtgatttg
gggttaaaaggcatcaagggcttccctggttctccaggagtcaaaggccctccaggacct
ccaggatacccaggacctcctggaccaatgggtatgagaggcagccagggacgtgatgga
attcctggtccagccggagaaaagggagaaacaggtttgctgggggcacctccaggccca
agagggagccctggtgttccaggagccaaaggagacaggggcgccccgggcttacccggc
ctcccaggcaggaaaggggcagtgggagacaccggccctcggggacccactggcataatg
ggactcccagggccaccaggttttcctggcgcaatcatccctggccagaaaggaaatcga
ggcccacctggcttcagaggaaacccaggtgagcccggtcctccgggacctccagggagc
cacgtaagaggcatcaaaggagacaagggaatcatgggtgagcctggccccaggggtttg
cctggaactataggagccgaagggccaccgggtccaccgggagcaccaggaagcccaggt
ctgccagggctcagaggtgatcctggattccatggatttccaggtgtgaaaggggagaag
ggtaatccgggatttctgggaccagctggacctccagggcaaattgggcccaaaggacca
cccggtgtacgtggagaccctggcacggttaagatcatctcccttccaggaagcccagga
ccacctggccgtgctggaggaccagggatgcaaggagaacccgggccaccggggccaccc
ggaatcctaggaccctgtgggccgagaggtaagccaggcaaggatggaagaccaggaact
cctgggccaattggagaaaaaggcaacaaaggttgcaaaggagagaaaggaccacctggg
tcagatggactgccaggcttgaaggggaaacctggacacattggacctcctgcaactgag
ccaatgaggagaggcttcgtcttcaccaggcacagtcagacgacagcgattccctcctgt
ccagaaggaacagagccactctatagtggattttctcttctttttgtacaaggaaatgaa
caagcccatggacaagacctgggaactctaggcagctgcctgcagcggtttaccacaatg
ccgttcttgttctgtaacatcaacgatgtatgtaattttgcatctcgaaatgattattca
tactggctgtcaacaccagctccgatgccaatggacatggctccaattactggcagggcc
ctggagccttatattagcagatgcacggtctgtgaaggtcctacaaatgccatcgccatt
cacagccaaaccactgccattccctcctgtcccaatggctggatttctctctggaaagga
ttttcgtttattatgttcacaagtgcaggttctgagggtgctgggcaagctctggcctcc
cctggctcctgcctggaagaattccgagccagtccattcatagagtgccatggaagagga
acgtgcaactactattcaaattcctacagtttctggttggcttcattaaacccccaaaga
atgttcagaaaacctattccgtcaactgtgaaagctggggagttagaaaacataataagt
cgctgtcgggtgtgcatgaagagaagacaatga
DBGET
integrated database retrieval system
