Lutra lutra (Eurasian river otter): 125095183
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Entry
125095183 CDS
T08100
Name
(RefSeq) collagen alpha-1(III) chain isoform X1
KO
K19720
collagen type III alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04611
Platelet activation
llv04820
Cytoskeleton in muscle cells
llv04926
Relaxin signaling pathway
llv04933
AGE-RAGE signaling pathway in diabetic complications
llv04974
Protein digestion and absorption
llv05146
Amoebiasis
llv05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125095183
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
125095183
09152 Endocrine system
04926 Relaxin signaling pathway
125095183
09154 Digestive system
04974 Protein digestion and absorption
125095183
09160 Human Diseases
09174 Infectious disease: parasitic
05146 Amoebiasis
125095183
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
125095183
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
125095183
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
llv00536
]
125095183
Glycosaminoglycan binding proteins [BR:
llv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125095183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
125095183
NCBI-ProteinID:
XP_047577252
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All DBs
Position
3:1983454..2023146
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AA seq
1466 aa
AA seq
DB search
MMSFVQKGTWLLLALLHPTVILAQQQAVDGGCSHLGQSYADRDVWKPEPCQICVCDSGSV
LCDDIICDDQELDCPNPEIPFGECCAVCPQPPTAPPRPPNGQGPQGPKGDPGPPGIPGRN
GDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQFESYDVKAGIGGGGMAGYPGPAGPPG
PPGPPGTSGHPGAPGSPGYQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRPGRPG
ERGLPGPPGMKGPAGMPGFPGMKGHRGFDGRNGEKGDTGAPGLKGENGLPGENGAPGPMG
PRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG
SSGSPGQRGEPGPQGHAGAPGPPGPPGSNGSPGGKGEMGPAGIPGAPGLMGARGPPGPPG
TNGVPGQRGGAGEPGKNGAKGEPGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPG
AAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGPRGAPGEPGRDGVPGGPGMRGMPG
SPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPG
GPGPQGPAGKNGETGPQGPPGPTGPAGDKGDAGPPGPQGLQGLPGTSGPPGENGKPGEPG
PKGESGSPGTPGGKGDSGAPGERGPPGAMGPAGPRGGTGPPGPEGGKGAAGPPGPAGPAG
TPGLQGMPGERGGPGGPGPKGDKGEPGSAGADGAPGKDGPRGPTGPIGPPGPAGQPGDKG
EGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPG
LAGPPGGAGPAGPPGPTGVKGERGSPGGPGAAGFPGGRGPPGPPGNNGNPGPPGPSGAPG
KDGPPGPPGSNGAPGSPGVSGPKGDAGQPGEKGSPGPQGPPGVPGPLGLAGITGARGLAG
PPGMPGPRGSPGPQGIKGESGKPGPAGHNGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG
LPGRDGAPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGETGPAGPSGAPGPAG
SRGPPGPQGPRGDKGETGERGSTGIKGHRGFPGNPGAPGSPGPAGHQGAIGSPGPAGPRG
PVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGG
AAALGVVGGGEKAGGFAPYYGDEPVDFKINTEEIMTSLKSVNGQLESLVSPDGSRKHPAR
NCRDLKFCHPELQSGEYWVDPNQGCKLDAIKVFCNMETGETCINASPRNVPRKNWWTDSG
AEKKHVWFGESVEGGFQFSYGNPDLPEDILDVQLAFLRLLSSRASQNITYHCKNSIAYMD
QAGGDVKKALRLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWGKTVFEYRTRKAVRLP
IVDIAPYDIGGPDQEFGVDIGPVCFL
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaggggacctggttactcctcgctctgcttcatcccacggtc
attttggcacaacagcaagctgttgatggaggatgctcccatcttggtcagtcctatgct
gatagagatgtctggaagccagaaccttgccaaatatgcgtctgtgactcaggatctgtc
ctctgcgatgacataatatgtgatgatcaagaattagactgtcccaacccagaaatccca
tttggagaatgttgtgcggtgtgcccccagcctccaacagctcctcctcgccctcctaat
ggtcaaggacctcaaggccctaaaggagatccaggtccccctggtattcctgggagaaat
ggtgatcctggtatcccaggacagccgggttcccctggttctcctggcccccctggaatc
tgtgaatcatgccctactggtcctcagaactattctccccagttcgagtcctatgacgtc
aaggctggaataggaggaggaggaatggcgggctaccccgggccagctggtccccctggc
cctccaggtccccctggtacatctggtcatcctggcgccccgggttctccaggataccaa
ggcccccccggtgaacctgggcaagccggtcctgctggccctccaggaccccctggtgct
ataggtccatctggccctgctggaaaagatggagaatcaggaagacccggacgacccgga
gagcgagggttgcctggacctccaggtatgaaaggtccagctggaatgcctggatttcct
ggtatgaaaggtcatagaggctttgatggacgaaatggagaaaagggtgatacaggtgct
cctggattaaagggtgaaaatggcctcccaggtgaaaatggagcccctggacccatgggt
cccagaggagctcctggtgagagaggacggcccgggctcccaggagctgcgggggctcga
ggtaatgacggtgctcgcggaagtgatggacagccaggcccccccggtccccctggaact
gcaggattccccggttcccccggtgctaagggtgaagttgggcctgcgggatcgcccggc
tcaagcgggtcccccggacaaagaggagaacctggacctcagggccatgctggtgcgcca
ggtcctcccggccctcctgggagcaatggtagtcctggtggcaaaggcgaaatgggtcct
gctggcattcctggagctcctggactgatgggagcccggggtcctcctgggccacccgga
accaacggtgttcctggacagcgcggcggtgcaggtgaacctggtaaaaatggtgccaaa
ggagagccggggccacgcggtgaacgtggggaagctggttctccaggtattccaggacct
aaaggtgaagatggcaaagatggttctccaggagagcctggggcaaacggacttccagga
gctgcaggagaaaggggtgcgcctggattccgagggcctgctggagccaacggccttcca
ggagaaaagggtcccgctggggagcgtggtggtcccggccccgcagggcctagaggagct
cctggagaacccggccgagatggtgtccccggaggtccaggcatgaggggtatgcccgga
agcccaggagggccaggcagtgatggaaaaccagggcctcccggcagtcaaggagaaagt
ggtcgaccaggtcctccaggcccatctggtccccgaggtcagcctggtgtcatgggtttc
cctggtcctaaaggaaatgatggcgcacctggcaagaatggagaacgaggtggccctgga
ggtcctggccctcagggtcctgctggaaagaatggtgaaactggacctcagggcccccca
ggacccactgggccagctggtgacaaaggagatgcaggacccccgggtccacaaggatta
caaggtttgcctggaaccagtggacctccaggagaaaatggaaaacccggcgaaccaggt
ccaaagggtgaatccggttcacctggaactccaggaggcaagggtgattcgggagccccg
ggcgaacgaggacctccgggagccatggggcccgcgggaccaagaggtggaactggcccc
cctggtcccgaaggaggaaagggtgctgctggtccccctgggccagctgggcctgccggg
actcctggtctgcaagggatgcctggagaaagaggaggtcctgggggccccggcccaaag
ggtgacaagggcgaaccgggcagtgcgggggctgacggagctccagggaaagacggtccc
aggggtcctactggtcccattggtccccctggcccagctggtcagcctggagataagggt
gaaggtggtgcccctggacttccgggtatagctggtccccgtggtggccctggtgagaga
ggcgagcatgggcctccaggacccgctggcttccctggtgctcctggacagaacggcgag
cccggtgccaagggagaaagaggtgctcccggcgagaagggtgaaggcgggccccctggc
ctcgcggggcctccgggcggtgccgggcctgcgggccctcctggtcccacgggcgtcaag
ggtgagcgtggcagtcctgggggtcctggcgccgctggcttccctggcggtcgtggtcct
cctggtcctcctggtaataatggtaacccaggcccccccggccccagtggtgctccaggc
aaggacggcccccccggcccccctggcagcaatggtgctcctggtagccctggggtgtct
ggacctaaaggtgatgctggccagcccggagagaagggatcacctggcccccagggccct
ccgggagttccaggcccgctgggacttgctgggattaccggagctaggggtctcgcagga
ccaccgggcatgccgggccctaggggaagcccaggcccacagggcatcaagggtgaaagt
gggaaaccaggacctgctggtcacaatggagaacgtggtcctcctggaccccagggtctt
cctggtctggctggtacagctggtgaacctggaagagatggaaacccaggatcagatggt
cttccaggccgagacggggctcccggtggcaagggtgatcgtggagaaaatggctctccc
ggtgcccctggtgctcctggccatccaggcccccctggtcccgttggtccagctggaaag
agtggtgacagaggagaaactggccctgccggtccttctggcgctccaggtcctgctggt
tcccgaggtcctcctggtccccaaggtccacgcggcgacaaaggtgaaaccggtgaacgt
ggctctacaggcatcaagggacatcgaggattccccggtaatccaggcgccccgggttct
ccaggtcccgccgggcaccaaggtgctatcggtagcccaggacccgcaggccccagagga
cccgttggacccagtggcccccccggcaaagatggcacgagtgggcatccgggccccatc
ggaccaccagggccgcgaggtaacagaggagaaagaggatccgagggctccccaggccac
cccggacagccgggcccacctggacctcctggtgcccctggtccgtgctgcggcggtggg
gctgccgccctgggtgttgttggaggaggtgagaaagctggtggttttgccccgtattac
ggagatgaaccagtggacttcaaaatcaacactgaggagatcatgacatcactcaaatca
gtcaatggacaactagaaagcctcgttagtcctgacggatctcgtaaacaccctgctcgg
aactgccgagacctgaagttctgccaccctgagctccagagtggagaatattgggttgat
ccaaaccaaggttgcaagttggacgccattaaagtattctgcaatatggaaactggggaa
acgtgcataaatgccagtcctcggaatgttccacggaagaactggtggacagattctggt
gctgagaagaaacatgtttggtttggagaatccgtggaaggtggttttcagtttagctat
ggcaatcctgaccttccagaagacatccttgatgtccagctggcgttcctcaggcttctc
tccagccgggcctcccagaacatcacgtaccactgcaagaatagcattgcatacatggat
caggccggcggcgatgtaaagaaggccttgaggctgatggggtcaaatgaaggtgaattc
aaggccgaaggaaacagcaaattcacatacacagttctggaggatggttgcactaaacac
actggggaatggggcaaaacggtcttcgaataccgaacgcgcaaggctgtgaggctacct
attgttgatattgctccctatgacattggtggtcctgatcaagaatttggtgtggacatt
ggccctgtttgctttttataa
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