Lutra lutra (Eurasian river otter): 125096066
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Entry
125096066 CDS
T08100
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03022
Basal transcription factors
llv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125096066
09124 Replication and repair
03420 Nucleotide excision repair
125096066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llv03021
]
125096066
03400 DNA repair and recombination proteins [BR:
llv03400
]
125096066
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
125096066
Transcription machinery [BR:
llv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125096066
DNA repair and recombination proteins [BR:
llv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125096066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
Motif
Other DBs
NCBI-GeneID:
125096066
NCBI-ProteinID:
XP_047578665
LinkDB
All DBs
Position
3:complement(112476438..112506804)
Genome browser
AA seq
782 aa
AA seq
DB search
MGKRDRGDRDKKKSKKRHYEDEEEDEDDVPGNYSQEAVPSAAGKQVDESGTKVDEYGAKD
YRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLTA
YSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESS
HPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAIAKTAEGSGGPSTSRVTDPQS
KSDIPTDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRND
SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSIAISTYSMLGHTTKRS
WEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLKKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEDEELAFSTREEQQQLLQKVLAAT
DLDAEEEVVAGEFGSRSSQVSRRFGTMSSMSGADDTVYMEYHSARNKASTKHVHPLFKRF
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaagagaccggggggatcgcgataagaagaaatccaagaagcggcactacgag
gatgaggaagaagatgaagacgacgtccctgggaactactctcaggaagcggtcccctcg
gcggccgggaagcaggtggatgagtctggcaccaaagtggatgaatatggagccaaggac
tacagactgcagatgccgctgaaggacgaccacacctcgaggcctctctgggtggctcct
gatggccacatcttcttagaagccttctctccagtttacaaatatgctcaagacttcctg
gtggccattgcagagccagtgtgccgaccaacccacgtgcatgagtacaaactaactgcc
tactccctgtatgcagctgtcagtgttgggttacaaactagtgacatcaccgagtacctc
aggaagctcagcaagacgggagtccctgatggaattattcaatttattaagttgtgtact
gtcagctatggaaaagtcaagctggtcctgaagcacaacaggtattttgttgaaagttcc
caccctgatgtcattcagcatcttcttcaggatccagtgatccgggaatgccgtctacgg
aactccgagggggaggctacagagctcatcacagagaccttcaccagcaagtctgctatt
gccaagactgctgaaggcagtggtgggccttccacttcccgggtgacagatccacagagt
aaatctgacatccccacagacctgtttgacttttatgaacaaatggacaaggatgaggaa
gaagaagaagagacccagacagtgtcttttgaagttaagcaggagatgattgaggaactc
cagaaacgttgcatccatctggagtaccctctgttggcagaatatgacttccggaatgat
tctgttaaccctgatatcaacattgacctgaaacccacagctgtccttagaccttatcag
gagaagagccttcggaagatgttcgggaatggacgtgcccgttctggggtcattgtgctt
ccttgtggtgctgggaagtccctggttggcgtgacagctgcatgcactgtgagaaagcgc
tgtctggtgctgggcaactccgctgtgtctgtggagcagtggaaagcccaattcaagatg
tggtccaccattgacgacagccagatctgccgcttcacctccgacgccaaggacaagccc
ataggctgctccattgccattagcacctactccatgctgggccacaccaccaaaaggtcc
tgggaggctgagcgagtcatggaatggctcaaaactcaggaatggggcctcatgatcctg
gatgaagtccataccataccagccaagatgttccgacgggtgctcaccatcgtgcaggcc
cattgcaagctgggtttgaccgcaacccttgtccgggaagatgacaaaatcgtcgattta
aattttctgattgggcccaaactctatgaagccaactggatggagctgcagaacaacggc
tacatcgccaaagtccagtgcgctgaggtttggtgcccaatgtctcctgaattttaccgg
gagtatgtggcaatcaaaaccaagaaacgaatcttgctgtataccatgaaccccaacaaa
ttcagagcttgccagtttctgatcaagtttcatgaaaggaggaatgacaagattattgtc
tttgctgacaatgtgtttgccctgaaggaatatgccattaggctgaaaaaaccctatatc
tatggtcctacatcccaaggagagaggatgcagatactccagaatttcaagcacaacccc
aaaatcaacaccatcttcatatccaaggtgggtgacacatcgtttgatctgccagaagca
aatgttctcattcagatctcatctcatggtggctcccggcggcaggaggcccagaggttg
gggcgagtgctccgagccaaaaaagggatggttgctgaggagtacaatgccttcttctac
tcactggtgtcccaggacacacaggaaatggcttattcaaccaagaggcagaggtttttg
gtagatcagggttatagctttaaggtgatcacaaagcttgctggcatggaggatgaagag
ctggcattttccacgagagaagagcagcaacagctcttacagaaagtcctggcggccact
gacctggatgctgaggaagaggtggtggcaggagaatttggctccagatctagccaggta
tctcggcgctttggcaccatgagctccatgtctggggccgacgacaccgtgtacatggag
taccattcggctcggaacaaggcttccacgaagcacgtgcacccgcttttcaagcgcttc
aggaaatga
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integrated database retrieval system
