Lutra lutra (Eurasian river otter): 125097981
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Entry
125097981 CDS
T08100
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03015
mRNA surveillance pathway
llv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125097981
09123 Folding, sorting and degradation
03018 RNA degradation
125097981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125097981
03041 Spliceosome [BR:
llv03041
]
125097981
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125097981
mRNA cycle factors
Stress granule specific factors
125097981
Spliceosome [BR:
llv03041
]
Complex C
Other components
Complex C specific factors
125097981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
125097981
NCBI-ProteinID:
XP_047582232
LinkDB
All DBs
Position
4:167221104..167236738
Genome browser
AA seq
662 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQTLAPRAAVAAAAAAPRAVAP
YKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTM
HSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAA
TS
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctctacgtgggtgacctgcactcg
gacgtcaccgaagccatgctgtatgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgacatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggctgacgccgagcgggccttggataccatgaactttgatgtgattaagggaaag
ccaatccgtatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaat
gtcttcatcaagaatctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacattctgtcttgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacgcaagaggctgctgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gctgagcttggagccaaagccaaggagttcaccaatgtttatatcaaaaactttggggaa
gaggtagatgatgagagtctgaaggagctgtttagtcagttcggtaagaccctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggccgtggaagagatgaatggaaaagaaatcagtgggaaagtg
atttttgtaggccgtgcacagaagaaagtggaacggcaggccgagttaaagcggaaattt
gagcagctaaaacaagagagaattagtcggtatcagggggtgaatctctacattaagaac
ttggatgataccattgatgatgagaagttaaggaaagagttttctccttttggatcaatc
accagtgctaaggtaatgttggaggatgggagaagcaaagggtttggctttgtctgcttc
tcatctcctgaagaggcgaccaaagccgtcactgagatgaatggacgcatcgtgggctcc
aagccactatatgttgctctggcccagaggaaggaagagagaaaggctcacctgaccaac
caatacatgcagcgggtggctggaatgcgagcactcccggccaacgccatcttaaatcag
ttccagcctgcagctggaggttactttgtgccggcagttccacaggctcagggaagacct
ccgtattatacacctaaccagttagcacagatgaggcctaatccccgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatccgccagtctgggcctcgtccc
gctcttcgccatctggctccaactggtaatgctccagcctctcgtggcctccctactacc
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggc
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcccacagctgtgcag
accttagcacctcgtgctgccgtcgctgctgctgctgctgctccacgggctgtcgcacct
tacaaatacgcctccagcgtccgcagccctcaccccgccatccagcctctgcaggcaccg
cagcctgcggtccacgtgcagggccaggagcccctgactgcctccatgctggccgcagcg
cccccgcaagagcaaaagcagatgctgggagaacgtttgttcccactcatccaaaccatg
cattcaaacctggctgggaaaatcacgggcatgctgctggagatcgacaactctgagctg
ctgcacatgctggagtcccccgagtcgctccgctccaaggtggatgaagccgtggcggtt
ctacaggctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgctgctgct
acctcttag
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