Lutra lutra (Eurasian river otter): 125098119
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Entry
125098119 CDS
T08100
Name
(RefSeq) syndecan-3
KO
K16337
syndecan 3
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04514
Cell adhesion molecules
llv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
125098119
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125098119
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
llv00535
]
125098119
Proteoglycans [BR:
llv00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
125098119
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GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
125098119
NCBI-ProteinID:
XP_047582525
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Position
4:174580048..174617116
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AA seq
442 aa
AA seq
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MKPGPPHRAGAAHGAGAGNGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVAMAVSTTPAVLPTVDIQ
PVGTPLEELPSGHPTPEPATSAPVVTEVPEEPSQRATTISTPTATTTATTGGALTVATVP
ATVATAAPSLPAAPPSTATTSVIRTTGVQRLLPLPLTTAATARATTPAAPAPPTTVAVLD
TEAPTPRMVSTATSRPRALPRPATTQEPDIPEKSTLPLGTTAPGPTEVAQTPTPESILTT
IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKPSAPPGALPKGARPGPSL
LDNAIDSGSSAAQLPQRSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
LEEPKQASVTYQKPDKQEEFYA
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaagccggggccaccgcaccgcgccggggccgcccacggggcaggcgccgggaacggg
gccgcggccgggcccggggcccgcgggctgctcctgccgccgctgctgttgctgctgctg
gccgggcgcgccgcgggggctcagcgctggcgcagcgagaacttcgagaggcccgtggac
ctcgagggctctggggatgacgactcctttcccgacgatgagctggatgacctctactca
gggtcgggctcgggttactttgagcaggagtcgggcattgagacagccatgcggttcagc
ccagacgtggccatggcggtgtcgaccacgcccgcagtgctgcccaccgtggacatccag
cctgtgggcaccccgttggaagagctcccctctgggcaccccaccccagagccagccacc
agcgcccccgtggtgacagaggtcccagaagaacccagccagagagccacaaccatctcc
actcccacggctaccacaactgctacgactgggggggccctaactgtggccacggtgcct
gccacagtggccactgccgcccccagcctccctgcggcccccccttccacggccaccacc
tccgtcataaggaccaccggtgtgcagaggcttctgcctcttccattgaccacggcagcc
acggcccgggccaccactccagcagcacccgcacctcccaccacggtggccgtcttggac
acagaggccccgacacctaggatggtcagcacagctacctccaggccaagggcccttccc
aggccagctaccacccaggagcctgatatccccgagaagagcaccttgcccctggggact
actgcccctggacccacggaggtggctcagaccccaactccggagtccatcctgaccacg
atccgggacgagcctgaggtgcctgtgagtggggggcccagcggggactttgagctgcca
gaggaggagaccacacagccagacacagccaatgaggtggtggccgtgggtggggccgcc
gccaagccatcagctccacctggggcgcttcccaagggtgcacgcccaggccccagcctc
ctggacaacgccatcgactcaggcagctcggcagctcagctgccccagagaagcatcctg
gagcggaaggaggtgcttgtagctgtgattgtaggtggggtggtgggcgccctgttcgct
gccttcctggtcaccttactcatctaccgcatgaagaagaaggacgagggaagctacacc
ctggaggagcccaagcaggcgagcgtcacgtaccagaagcccgacaagcaggaggagttc
tacgcctag
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