KEGG   Lutra lutra (Eurasian river otter): 125098540
Entry
125098540         CDS       T08100                                 
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
llv  Lutra lutra (Eurasian river otter)
Brite
KEGG Orthology (KO) [BR:llv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:llv04121]
    125098540
   03400 DNA repair and recombination proteins [BR:llv03400]
    125098540
Enzymes [BR:llv01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     125098540
Ubiquitin system [BR:llv04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    125098540
DNA repair and recombination proteins [BR:llv03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    125098540
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX zf-RING_2 DEAD RING_XB3-XBAT31 zf-RING_5 zf-C3HC4_4 HDA2-3 zf-ANAPC11 zf-Nse zf-rbx1 Prok-RING_4
Other DBs
NCBI-GeneID: 125098540
NCBI-ProteinID: XP_047583390
LinkDB
Position
1:complement(76031127..76087084)
AA seq 1011 aa
MSWMFKRDPVWKYLQTVQYGTHGNFPRLSYPTFFPRFEFQDIIPPDDFLTSDEELDSVLF
GTLRGHVVGLRYYTGVVNNNEMVALQREPNNPYDKNAIKVNNVNGNQVGHLKKDLAAALA
YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEEHRKAVLDQLKKHGFKLGPAPKTLGF
SLENSWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAVETPL
LPHQKQALAWMVSRENSKDLPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK
TLTAIAVILTNFHDGKPLPIERIKKSQLKKECNVNDQSMKLGGNNTSEKADGLIKGSRCS
GEPSISDVKGKNKYPKSELSSSRPKRRKTAIQHTESSDSEENEISELPQKMKGKLKNPQS
ETKRVKAGSSKVKEDTEFACALTSSTPTTKRRMLKKGASAMEGSKKTDVEERSRTTLIIC
PLSVLSNWIDQFGQHIKADVHLNFYVYYGPDRIRDPALLSKQDIVLTTYNILTHDYGTKG
DSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSF
LKLKPFLDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERK
VFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLL
TNAVSSSGPSAFSLGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHV
FCKPCICQVIQNEQPHAKCPLCRNDIHGDNLLECPPEELACDTEKKSNMEWTSSSKINAL
MHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQ
NTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIIT
KFIVKDSVEENMLKIQNTKRELAAGAFGTKKTNANEMKQAKINEIRTLIDL
NT seq 3036 nt   +upstreamnt  +downstreamnt
atgtcctggatgttcaagagagatcctgtttggaagtacttgcagactgtccaatacgga
acccatggaaattttccacgcctctcatatccaactttctttccccgttttgaattccaa
gatattatacctccagatgacttcctaactagtgatgaagagctagattcagttttattt
ggaactttgagaggtcatgtagttggactacgctattacacaggagtagttaataataat
gaaatggttgcgttacaacgagagcccaataatccctatgataagaatgcaattaaagta
aacaatgtaaatggaaatcaggttggccatttaaagaaagatcttgcagctgcattggcc
tatatcatggacaacaaattggcacagattgaaggggtcgttccttttggtgcaaacaat
gccttcaccatgcctctccatatgactttttggggaaaagaagaacatagaaaagcggtt
ttagatcagttgaagaagcatggatttaaattgggtcctgcaccaaaaactttaggattt
agtttagaaaatagttggggctctggaagagctggaccaagctatagtatgccagttcat
gctgcagtacagatgacaactgagcagcttaaaacagaatttgacaaattgtttgaagat
ttaaaagaagatgataaaactcatgaaatggaaccagctgaggctgttgaaacaccattg
cttccacatcaaaaacaagctctagcttggatggtttcacgggaaaacagtaaagacctt
ccgccattttgggaacagcgaaatgacttatactataacacaataacaaatttttctgag
aaggaccgaccagaaaatgtccatggaggaattttagctgatgatatgggtctgggcaaa
actctgacagccattgcagttattcttaccaacttccatgatggaaaacctcttcctatt
gaaagaattaaaaaaagtcagctgaagaaggagtgtaatgttaatgatcaatctatgaaa
cttggaggaaacaataccagtgaaaaggcagatggactaatcaaaggatctagatgtagt
ggagaacccagtatttcagatgtcaagggaaagaataaatatcccaagtcagaattgtct
agctcccgccccaaaagaagaaaaactgctatccagcacactgaaagcagtgattcagag
gaaaatgaaataagtgaattgccacagaaaatgaaagggaaactgaaaaatccacagtct
gagactaaaagagtaaaagcaggttcttctaaggttaaagaagatacagagtttgcatgt
gcacttacttcatctacccctacaacaaaaaggagaatgttgaaaaagggagcatctgcc
atggagggttcaaagaaaactgatgttgaagagagatcaagaacaacactgatcatctgc
ccactttctgtgttaagcaactggattgaccagtttggacaacatataaaagcagatgtg
cacttgaatttttatgtttattatggtcctgatcgtataagagacccagccttgctttca
aaacaggatattgttttgactacatacaacattttaactcatgactacggaactaaaggt
gatagtccattacatagcataaggtggctaagagtgatcctggatgaaggacatgccatc
cgaaatccgaatgctcagcagacaaaagctgtacttgatttagaagcagaaagaagatgg
gtattaacaggtactccgattcaaaattctttaaaggacttgtggtctcttctttccttt
ttaaaacttaaaccgtttcttgatagagaatggtggcatagaacaatacaacgtcctgtc
acaatgggagatgaaggaggacttaggcgcttacaatccctaattaaaaatattacccta
agaagaacaaagacaagcaaaatcaaaggaaaacctgttttggagttaccagaacgtaaa
gtatttattcagcacattacactttcagatgaagagagaaaaatttatcagtctgtgaaa
aatgaaggcagagctactattggaaggtattttaatgaaggcactgtccttgcgcactat
gcagatgtcctgggtcttttgcttagattgcggcagatttgttgtcatactcaccttctt
acaaatgcagtgtcttccagtggtccctcagccttttctctaggaaatgatacacctgag
gaactacggaaaaagttaataaggaagatgaagttaattctgagctcaggttctgatgaa
gaatgtgcaatttgcttggattctttaacagttcctgtcataacacactgtgcacatgtc
ttttgtaaaccctgtatttgccaagtcattcagaatgagcagccacatgctaaatgtcct
ttgtgcagaaatgatatacatggagacaatttattagaatgccctccagaagaattggca
tgtgacactgagaaaaagtctaatatggaatggacatctagttcaaagattaatgctcta
atgcatgcactaattgacttaagaaagaagaatcccaacataaaaagtttagttgtttct
cagtttacaacattcctgtctttaattgaaacaccactcagagcctctggatttgtgttt
actcgtttggatggttccatggcacagaagaaaagagttgaatcaattcagtgttttcaa
aacactgaagcaggatctccaaccataatgcttctatccttaaaagcaggtggagttggc
ctgaatctttctgccgcttctcgagtgtttttaatggatccagcttggaatccagctgct
gaagatcagtgctttgacagatgccatagacttggacagaagcaagaagttatcatcaca
aaattcattgtgaaggattctgttgaagaaaatatgctgaaaatacaaaacacaaagaga
gaacttgctgcgggagcctttggaactaagaaaacaaatgctaatgaaatgaaacaagct
aaaattaatgaaatcagaactttaattgatttataa

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