Lutra lutra (Eurasian river otter): 125098995
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Entry
125098995 CDS
T08100
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
125098995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
llv03000
]
125098995
Transcription factors [BR:
llv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125098995
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
125098995
NCBI-ProteinID:
XP_047584279
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Position
4:complement(78609520..78611954)
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AA seq
406 aa
AA seq
DB search
MSSPDAGYASDDQSQTRSALPAVMAGLGACPWAESLSPLGDMKVKGEAVASSGAPAGPAG
RAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE
AERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAATLGPEGGRVAMDGLG
LPFPEQGFPAGQPLLPPHMGGHYRDCQGLGAPPLDGYPLPTPDTSPLDGVEPDPAFFAAP
MPGDCPAAGPYSYPQASDYAGPPEPPVGPMHSRLSLEQAGPAMPGHVAPSSALQLYYNAI
SSPAAGGGRGFSMHPQQHPPGPGQPSPPPEALPCRDGGDPNQPAELLGEVDRTEFEQYLH
FVCKPEMGLPYQGHDSSVNLPDSHGAISSVVSDASSAVYYCSYPDV
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcccggatgcggggtacgccagtgacgaccagagccagacccgcagcgcgctg
cccgcggtgatggccgggctgggcgcctgcccctgggccgagtcgctgagcccccttggg
gacatgaaggtgaagggcgaggcggtggcgagcagcggggcgccggctgggccggcgggc
cgagccaagggcgagtctcgcatccggcggccgatgaacgctttcatggtgtgggcgaag
gacgagcgcaagcgcctggcgcagcagaatcccgacctgcacaacgcggagttgagcaag
atgctgggaaagtcgtggaaagcgctgactctggcggagaagcggcccttcgtggaggag
gccgagcggctgcgcgtgcagcacatgcaggaccaccccaactacaagtaccggccgcgg
aggcgcaagcaggtgaagcgactgaagcgggtggagggcggcttcttgcacggccttgcc
gagccacaggccgccacgctgggccccgagggcggccgcgtggccatggatggcctgggc
ctgcccttccccgagcagggcttcccggccggccagccgttgctgcccccgcacatgggc
ggccactaccgcgactgccagggactgggagcgcctccgctcgacggctacccgctgccc
acgccggacacgtccccgctggacggcgtggagccggatcccgccttcttcgccgctccg
atgcccggggactgcccagcggccggcccctacagctacccacaggcctcggactacgcg
gggcccccggagcccccagtcggccccatgcactcccgtctaagcctggaacaggcgggc
cctgcaatgccgggccacgtggcgccctccagcgccctgcagctgtactacaacgcgatt
agctcgcccgcagcgggcggcgggcgcggcttctccatgcacccgcagcagcacccaccc
ggccccgggcagccgtcgccccctcccgaggccctgccctgccgggacggcggggacccc
aatcagcccgccgagctcctcggggaggtggaccgcacggaatttgaacagtatctacac
tttgtgtgcaagcccgagatgggtctcccttaccagggacatgactctagtgtgaatctc
ccagacagccacggggccatttcctcggtggtgtccgatgccagctctgcggtatattac
tgcagctaccctgacgtttga
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