Lutra lutra (Eurasian river otter): 125099090
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Entry
125099090 CDS
T08100
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125099090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125099090
03012 Translation factors [BR:
llv03012
]
125099090
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125099090
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125099090
Translation factors [BR:
llv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125099090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
HA2_C
Helicase_C
HA2_N
AAA_22
AAA_19
nSTAND3
PhoH
AAA_14
ATPase
NPHP3_N
RsgA_GTPase
AAA_23
AAA_34
DUF6782
NACHT
Motif
Other DBs
NCBI-GeneID:
125099090
NCBI-ProteinID:
XP_047584395
LinkDB
All DBs
Position
1:complement(80892451..80946541)
Genome browser
AA seq
1013 aa
AA seq
DB search
MSYDYHQNWGRDGGPRNSGGGYGGSYGAGHGGGHGGNRGSGGGGGGGGGGGGRGGRGRHP
GHLKGREIGLWYAKKQGQKNKEAERQERAVVHMDERREEQIVQLLHSVQAKNGKDSEAQI
SWFAPEDHGYGTESPTENKPNSEKKLENQEKKLISQEKRTFRIRDKYIDRDSEYLLQENE
PDVTLDQQLLEDLQKKKSDLRYIEMQHFREKLPSYGMQKELVNMIDNHQVTVISGETGCG
KTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVAAERAESCGNGNSTGYQIR
LQSRLPRKQGSILYCTTGIILQWLQSDSHLSSVSHIVLDEIHERNLQSDVLMTVIKDLLS
FRPDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEKIRYVPEQKEHR
SQFKRGFMQGHVNRQEKEEKEAIYKERWPDYVRELRKRYSASTVDVLEMMDDDKVDLNLI
AALIRHIVLEEEDGAILVFLPGWDNISTLHDLLMSQVMFKSDRFLIIPLHSLMPTVNQTQ
VFKRTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKAN
AKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYFL
SRLMDPPSDEAVSLSIKHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCL
DPVLTIAASLSFKDPFVIPLGKEKTADARRKELAKDTKSDHLTVVNAFEGWEEARRRGFR
YEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRNPKDPKSNINSDNEKIIKAVI
CAGLYPKVAKIRLNLGKKRKMVKVYTKTDGLVAIHPKSVNVEQTEFHYNWLIYHLKMRTS
SIYLYDCTEVSPYCLLFFGGDISIQKDNDQETIAVDEWIVFQSPARIAHLVKELRKELDI
LLQEKIESPHPVDWKDTKSRDCAVLSAIIDLIKTQEKASPRNLPPRFQDGYYS
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgagctatgattaccatcaaaactggggccgggatggtgggccacgcaactccggcggg
ggctatggaggaagttatggggcgggccatggaggaggccatggagggaaccgaggctcc
ggaggcggcggcggcggcggaggaggaggtggtggtcgaggcggccgaggccgacatcct
gggcacctgaaaggccgcgaaatcggcttgtggtatgcaaagaaacagggacagaagaac
aaggaggcggagaggcaggagagagctgtagtacacatggatgaacggcgagaagaacag
attgtgcagctgctgcattcagtccaggcaaagaatggtaaagactcagaagcacagatc
tcctggtttgctcctgaagatcacggatatggtactgaatctcctactgagaacaaaccc
aactcagagaagaaacttgaaaaccaggaaaagaaattgataagtcaagaaaagagaaca
tttagaatcagggacaaatatattgaccgagattctgaatatctcttgcaagaaaatgaa
ccagatgtaactttagaccaacaactgttggaagatttacaaaagaaaaaaagtgacctc
cggtatatcgaaatgcagcatttcagggaaaagctgccttcatatggaatgcaaaaggaa
ttggtaaatatgattgataaccatcaagtaacagtaataagtggtgaaactggatgtgga
aaaactactcaagttactcagttcattttggataactacattgaaagagggaaaggatct
gcatgcaggatagtttgtacacagccaagaagaattagtgccatttcagtcgcagagaga
gtggctgcagaaagggcagaatcttgtggcaatggtaacagtactggataccagattcgt
ctccagagtcggttgccaaggaaacagggttctatcttatactgcacaacaggaatcatc
ctgcagtggctccagtcagactcgcatttgtccagcgttagtcatattgtgcttgatgaa
atccatgagagaaatctacagtcagatgttttaatgacggttattaaagatcttctcagt
tttcgacctgacctgaaagtgatattgatgagtgcgactttaaatgctgagaaattttca
gaatatttcggtaactgtccaatgatacacatacctggttttactttcccggttgtggag
tatcttttggaagatataattgaaaaaataaggtatgttccagaacaaaaagaacacagg
tctcagtttaagaggggtttcatgcaagggcatgtaaatagacaggaaaaagaagaaaaa
gaagcaatctataaagaacgctggccagattatgtaagggaactgcgaaaaaggtattct
gcaagtaccgtagatgttctggaaatgatggatgatgataaagttgatctgaatttgatt
gctgccctcattcgacacattgttttagaagaagaggatggtgcaatattggtctttcta
ccaggctgggacaatatcagcactttacatgatctcttgatgtcacaagtgatgtttaaa
tcagacaggtttcttattatacccctacattcactgatgcctacagttaaccagacacag
gtatttaaaagaacccctcctggtgttcggaaaatagtaattgctaccaatattgcagag
actagcattaccatagatgatgtcgtttatgtgatagatggaggaaaaataaaagaaaca
cactttgacacacaaaacaacatcagtacaatgtctgctgagtgggttagtaaagctaat
gccaaacaaaggaaaggtcgagctggaagagttcaacctggtcattgctatcatctgtat
aatggtcttagagcaagccttctggatgactatcagctaccggaaatcttgagaactcct
ttggaagaactttgtttacaaataaagattttaaggctaggtggaattgcttattttctg
agtaggttaatggatccaccttcagacgaagcagtgtcactctccataaaacacctgatg
gaactgaacgctttggataaacaagaagaattgacaccccttggagtccacttagcacga
ttaccagttgagccacacatcgggaagatgattctttttggagctctgttctgttgttta
gatccagtacttaccattgctgctagtctcagcttcaaagatcccttcgtcattccattg
ggcaaagaaaagactgcagatgcaagaagaaaagaattggcaaaagatactaaaagtgac
cacctgacagttgtaaatgcatttgagggctgggaagaagctaggcgacgtggtttcaga
tatgaaaaagactactgctgggaatattttttgtcttcaaacacattgcagatgctgcat
aacatgaaaggacagtttgctgagcatcttcttggagcgggatttgtaagcagtagaaat
cctaaagatccaaaatctaatataaattcagataatgagaagataattaaagctgtcatc
tgtgctggtttatatcccaaagttgctaaaatccgactaaatttgggtaaaaaaaggaaa
atggtcaaagtttacacaaaaactgatggactagttgctattcatcctaaatctgttaat
gtggagcaaacagaatttcactacaactggcttatctatcatctgaagatgagaacaagt
agtatttacttatatgactgtacagaagtttccccatattgtctcttattctttggaggt
gatatttccatccagaaggataatgatcaggaaactattgctgtagatgaatggattgtc
tttcagtctccagcaagaattgcccatcttgttaaggaattaagaaaggagctagatatc
cttctgcaagagaagatcgaaagtcctcatcctgtagattggaaagatactaaatccaga
gactgtgctgtactgtcagctatcatagacttgatcaaaacacaggaaaaagcaagtccc
aggaacttaccgccacgattccaggatggatattacagctga
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