Lutra lutra (Eurasian river otter): 125099164
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Entry
125099164 CDS
T08100
Name
(RefSeq) collagen alpha-2(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04151
PI3K-Akt signaling pathway
llv04510
Focal adhesion
llv04512
ECM-receptor interaction
llv04820
Cytoskeleton in muscle cells
llv04974
Protein digestion and absorption
llv05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125099164
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125099164
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125099164
09142 Cell motility
04820 Cytoskeleton in muscle cells
125099164
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125099164
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
125099164
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
llv00535
]
125099164
Proteoglycans [BR:
llv00535
]
Extracellular matrix (ECM) proteoglycans
Others
125099164
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125099164
NCBI-ProteinID:
XP_047584500
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Position
4:166579332..166595167
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AA seq
697 aa
AA seq
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MAAAAAPRSLLLLLQVLGLALAQMRGPPGEPGPPGPPGPPGVPGSDGIDGDKGPPGKAGP
PGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGPGFAGPP
GPPGPVGLPGEIGVTGPKGDPGPEGPSGPPGPPGKPGRPGTIQGLEGSAEFLCPTNCPAG
VKGPPGLQGVKGHPGKRGVLGDPGRQGKPGPKGDAGASGEQGIPGPPGPQGIRGYPGMEG
PKGETGPRGYKGMVGSIGASGSPGEEGPRGPPGRAGEKGDVGSQGVQGPQGITGPKGATG
PPGIDGKDGTLGTPGMKGSAGQAGRPGNQGHQGLAGVPGQPGTKGGPGDKGEPGQQGLPG
FSGPPGKEGEPGPQGEIGPRGVIGQKGDEGERGPVGQPGPQGRQGPKGEQGPPGIPGPQG
LPGIKGDKGSPGKTGPRGSVGDPGVAGLRGEKGEKGESGEPGPKGQQGVRGEPGYPGPSG
DAGAPGVQGYPGPPGPRGLVGDRGLPGLPGRQGVAGRDASDQHIVTVMMKMMQDLSSPSP
PPEQLAEVAVSARREALGAVGMVGPPGPPGPPGYPGKQGPHGHPGPRGVPGIVGAVGQIG
NTGPKGKRGEKGDQGEMGRGHPGMPGPPGIPGLPGRPGQAINGKDGARGSPGATGEAGRP
GLPGPVGLPGFCEPAACLGASAYASARLTEPGSIKGP
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcggccgccccccgcagcctcctgctgctcctccaggtgctcgggctcgcc
ctggcgcagatgagaggtccgcccggagaaccggggcccccgggccccccagggccgccg
ggagtgcctggatctgacggcatcgacggtgacaaggggcccccggggaaagctggccct
ccgggacctaagggagagcctggcaaagcagggccagatgggcccgacgggaagcctggg
attgatggtctaactggagccaagggggagcctggccccatggggatccctggagtcaag
ggccagcccggtctcccaggtccacctggtctgccaggccctggctttgctggacctcct
gggccacccggacctgttggcctcccaggcgagattggagtcacaggccccaagggggat
cctggaccagaggggccatcggggcccccggggccacccggcaaaccgggccgacctgga
accatccagggcctggaaggcagcgcggaattcttgtgtccaaccaactgtccagcgggg
gtgaaaggccccccagggctgcagggagtgaaggggcatcctggcaaacgtggggttctg
ggagatcctggccgccaggggaagccgggtcccaaaggagatgcaggtgcctctggagag
caaggcatccctggaccaccgggtccccagggcatcaggggctacccgggcatggaggga
cccaaaggagagacgggtcctcgtgggtacaaaggcatggtgggctccattggtgcctct
gggtcacctggtgaggaaggtccacgggggccaccaggccgagcaggggagaagggcgat
gtgggcagccaaggtgttcaaggaccccagggaataacaggcccaaagggagcaaccggc
cctccaggcatcgacggcaaggacgggaccctaggcacacctggcatgaagggcagtgca
ggacaggcggggcggccaggaaaccaaggccaccagggcctagcgggtgtgccaggccag
cccgggacaaaaggaggtccaggagacaagggtgaaccaggccagcagggcctccctgga
ttctctggtcctcctgggaaggagggagagccaggacctcaaggagaaattggaccccga
ggcgtcatagggcagaagggtgacgagggtgagagagggcctgtggggcagccaggccct
caaggacggcagggacccaaaggggagcaaggcccccccggaattccagggccccaaggc
ttgccaggcatcaagggagacaagggctccccagggaagaccggcccccgcggcagcgtg
ggcgacccgggggtggccggcctccggggagagaaaggcgagaagggcgagtctggcgag
ccggggcccaagggacagcaaggagtccgcggagaacccggctacccgggccccagcggg
gatgcgggcgccccgggggtgcagggctaccccgggccccccggccctcgaggactggtt
ggagaccgaggcctgcccggactgcccgggagacagggagtggcgggtcgagatgccagc
gaccagcacatagtgaccgtgatgatgaagatgatgcaagacctctcatctccctcccct
cctccagagcaactggcagaggtcgctgtgagtgccaggcgggaggccctgggtgcagtc
gggatggtgggtcctccaggaccccctgggcctcctgggtatccaggcaagcagggaccc
catgggcaccctggccctcggggtgtccctggcatcgtgggagctgtgggtcagattggc
aacacagggcccaagggaaaacgcggagagaagggtgaccagggagagatgggacgtggg
caccctgggatgccagggcccccggggattccaggactccctggccggcccggccaggca
atcaacggcaaggatggagctcgagggtccccaggggccacaggagaagcaggccggcca
ggcctgccaggccccgtggggctgccaggcttctgtgagcctgcagcctgccttggagcc
tcagcctatgcctctgcacgcctcacggagcctggatccatcaaagggccatga
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