Lutra lutra (Eurasian river otter): 125099751
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Entry
125099751 CDS
T08100
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03440
Homologous recombination
llv03450
Non-homologous end-joining
llv04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125099751
03450 Non-homologous end-joining
125099751
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
125099751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
llv03032
]
125099751
03400 DNA repair and recombination proteins [BR:
llv03400
]
125099751
DNA replication proteins [BR:
llv03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
125099751
DNA repair and recombination proteins [BR:
llv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
125099751
BRCA1-C complex
125099751
NHEJ (non-homologous end-joining)
MRX complex
125099751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
AAA_29
DUF2703
Motif
Other DBs
NCBI-GeneID:
125099751
NCBI-ProteinID:
XP_047585073
LinkDB
All DBs
Position
5:71774431..72006036
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGEVIAVQRSMVCTQKSKKTEFKTLEGVITR
TRHGEKVSLSSKCAEIDREMISSLGVSKSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRQTQGQKVKECQTELKYLKQNKEKACEIHDQITSKEAQLTSSKEI
VKSYENELDPLKNRLKEIEQNLSKIMRLDNEIKALDSRKKQMEKDNSELEQKMEKVFQGT
DEQLNDLYHNHQRTVREKERRLVDCQRELEKLNKESRLLNQEKSELLVEQGRLQLQADRH
QEHIQARDSLIQSLATQLELDGFERGPFNERHIKNFHKLVRERQEREAEIASQLMNDFAE
KETLKQKQIDEIRDKKTGLGRIIELKSEILTKKQNELRNVKHELQQLEGSSDRILELDQE
LSKAERELSKAEKNSNVEALKTEVINLQNEKADLDRTLRKLDQEMEQLNYHTTTRTQMEM
LTRDKADKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
LASSEQNKSHINNELKGKEERLSSYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKEKRRDEMLGLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEEQDTLLGTIMP
EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGLDLDRTVQQVNQEKQEKQHKLD
TVSSKMELNRKLIQDQQEQIQHLKSTTNELKSEKLHISTNLQRRQQLEEQTVELSTEVQS
LFREIKDAKEQLSPLETTMEKFQQEKEELINKKNKSNKIAQDKMNDIKEKVKNIHGYMKD
IENYIQDGKDDYKKQKENELNKVIAQLNEYEKHKENINKDMGIMRQDIDTQKIQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQMKNEHQKLEEKIDNIKRNHSLAVGRQKG
YEEEIIHFKRELREPQFRDAEEKYREMLIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRNTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVDKFYRIKKNIDQCSEIVKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatcgaaaagatgagcattttgggcgtgcggagttttggaatagaggacaaa
gataagcaaattatcacttttttcagccccctcacaattttggttggacccaatggggcg
gggaagacgaccatcattgaatgtctcaaatatatttgtactggagattttcctcctgga
accaaaggaaatacatttgttcatgatcccaaggttgctcaagaaacagatgttagagcc
cagattcgtctgcagtttcgtgatgtcaatggagaagttatagctgtacagagatctatg
gtgtgtactcagaaaagcaaaaagacagagtttaaaaccctggaaggagtcattactaga
acaaggcatggtgagaaggtcagtctcagctctaagtgtgcagaaattgaccgagagatg
ataagttctcttggggtttccaagtctgtgctaaataatgtcattttttgtcaccaagaa
gactctaattggcctctaagtgaagggaaggctctgaagcaaaaatttgatgagattttt
tcagcaacaaggtacattaaagccttggaaacacttcggcaggtacgtcagacacaaggt
cagaaggtaaaagaatgtcaaacagaactaaaatatttgaagcaaaataaggaaaaagct
tgtgagatacatgaccagattactagtaaggaagctcagttaacatcatcaaaggaaatt
gtcaaatcctatgagaacgaacttgatccattgaagaatcgtctaaaagaaattgaacaa
aacctctctaaaataatgagacttgacaatgaaattaaagccttggatagccggaagaag
caaatggagaaagataatagtgaactggaacagaaaatggaaaaggtgtttcaagggact
gatgagcaactaaatgatttatatcataatcaccagagaacagtaagggagaaagaaagg
agactggtagactgtcagcgtgaactggaaaagttaaataaagaatcaaggcttctcaat
caggaaaaatcagaactgcttgttgagcagggtcgtttgcagctacaggcggatcgccat
caagaacatatccaagctagagattcattaattcagtctttggcaacgcagctagaattg
gatggctttgagcgtggaccattcaatgaaagacatattaaaaattttcacaaacttgtg
agagagagacaagaaagggaagcagaaattgccagccagctgatgaatgactttgcagaa
aaagaaactctgaaacaaaaacagatagatgaaataagggacaagaaaactggactggga
agaataattgagctaaaatcagaaatcctaactaagaagcagaatgagctgagaaatgtg
aagcatgaattacagcagttggaaggatcttcagacaggattcttgaactagaccaggag
ctctcaaaagctgaacgtgagctaagcaaggctgagaaaaacagcaatgtagaagctcta
aaaacagaagtaataaaccttcaaaatgagaaagcagacctagacaggaccctgcgtaaa
ttggaccaggagatggaacagttaaactatcatacaacaacacgtacccagatggagatg
ctgaccagagacaaagctgacaaagatgaacaaatcaggaaaataaaatctcgacacagt
gatgaattaacttcattgttaggatattttcccaacaaaaaacagcttgaagactggctt
catagtaaatcaaaagaaattaatcagaccagggacaggcttgccaaattgaacaaagaa
ctagcttcatctgagcaaaataaaagtcatataaataatgaactaaaagggaaagaagaa
cggttgtccagttatgaagacaagctgtttgatgtttgtggtagccaggattttgaaagt
gatttagacagacttaaagaagaaattgaaaaatcctcaaaacaacgagccatgctggct
ggagccacagcagtttactcccagttcattactcagctaacagatgaaaaccagtcatgt
tgccctgtctgtcagagggtttttcagacagaagctgaattacaggaagtcatcagtgat
ttgcagtctaagctgcggcttgctccagataaactgaagtcaacagaatcagaactaaag
aaaaaagaaaaacggcgtgacgaaatgctgggacttgtccccatgaggcaaagcataatt
gatttgaaggagaaggaaataccagaattaagaaacaaactgcagaatgtcaatagggac
atacagcgcttaaagaatgacatagaggaacaggatacactcttgggcacaataatgcct
gaagaagaaagtgctaaagtctgcctgacagatgttacaattatggagaggttccagatg
gaacttaaagatgttgaaagaaaaattgcacaacaagcagctaagctgcaaggactagac
ttggatagaactgttcaacaagtaaaccaggaaaaacaagaaaagcaacacaaattagat
acagtttccagtaagatggaattgaatcgtaagcttatacaggaccagcaggaacagatc
caacaccttaaaagtacaacaaatgaacttaaatcagagaaacttcatatatctactaat
ttacaacgtcgtcagcaactagaggagcagactgtggaattatccactgaagttcagtcc
ttattcagagagataaaggatgctaaagagcagttaagccctttggaaacaacaatggag
aaattccagcaggaaaaagaagaattaatcaacaaaaaaaataaaagtaacaaaatagcc
caggataaaatgaatgatatcaaagaaaaggttaaaaatattcatggttatatgaaagac
attgagaattatattcaagatgggaaagatgactataagaagcaaaaagaaaatgaactt
aataaagtaatagctcaactaaatgaatatgagaaacacaaagaaaatataaataaagac
atgggaatcatgagacaagatattgatacacagaagatacaagagagatggctacaggat
aaccttactttaagaaaaagaaatgaggaactaaaagaagttgaagaagaaagaaaacag
catttgaaggaaatgggtcaaatgcaggttttacaaatgaagaatgaacatcagaagttg
gaagaaaaaatagacaatataaaaagaaatcacagtttggcagtagggcgacaaaaaggt
tatgaggaagaaattattcattttaagagagaacttcgagaacctcaatttcgggatgca
gaggaaaagtacagggaaatgctgattgttatgagaacaacagagctcgtgaacaaggat
ctggacatttattataagacccttgatcaagcaatcatgaaatttcacagtatgaaaatg
gaagaaatcaacaaaattattcgtgacctttggcgaaatacctatcgtggacaagatatt
gaatacatagaaattcgatctgatgccgatgaaaatgtatcagcctctgataaaaggcgg
aattacaactaccgcgtggtaatgctaaaaggagacacagccttggatatgcgaggacga
tgcagtgctggacaaaaggtgttagcctccctcatcattcgcctggccttggctgaaacg
ttctgcttgaactgtggcatccttgccttggatgagccaacaacaaatcttgaccgagaa
aacattgagtctcttgcacatgctcttgttgagataatcaagagtcgctcgcagcagcgc
aacttccagcttctggtcatcacgcatgatgaagattttgtggagctcttaggccgctct
gaatatgtggataaattctacaggattaagaagaacattgatcagtgctcagagattgtg
aaatgtagtgttagctccctgggttcttatgttcattaa
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integrated database retrieval system
