Lutra lutra (Eurasian river otter): 125099991
Help
Entry
125099991 CDS
T08100
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
llv
Lutra lutra (Eurasian river otter)
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
llv03041
]
125099991
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125099991
Spliceosome [BR:
llv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125099991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
AAA_22
Ank
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
Ank_4
ABC_tran
T2SSE
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
125099991
NCBI-ProteinID:
XP_047585662
LinkDB
All DBs
Position
5:complement(149646899..149723691)
Genome browser
AA seq
1429 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGGPAQGGPGGGGRARGLKDIRIDEEVKIAVNIALERFRYGDQ
REMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTH
NTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKR
GESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPC
RIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLM
AGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFG
SCPVIHIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENT
FKPESQRQRTVPSVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKD
VDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANIHSKASNGW
MALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVHTNGSDLSAEDRELLKAYHHSFDD
EKVDLDLIMHLLYNICHGCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFML
HSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVT
MLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTK
LLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHL
GKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALL
RAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDV
NTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPAN
GQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFR
ADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRAP
SKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKT
SADTEFSDESAAAERVLAKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVKSTDSNSY
PSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLN
RAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWVRKESLPF
QFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGDKTAAD
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctccccgcggccgcccgctcctggaggcggcgggggcggc
ccagctcagggcggccctgggggcgggggccgggcgagggggctgaaggacattcgtata
gacgaggaggtgaagatcgcggtcaatatcgctctggagcgcttccgatacggggaccag
agagaaatggaatttccttcctctttgaccagcactgaaagagcctttattcatcgattg
agtcaatctcttggtttggtctctaaaagtaaaggaaagggagcaaatagatacctaact
gtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgactcat
aatacaaaacatgctgttaggagcctaattcagagatttcctgtcaccaataaagagcgt
actgaacttctacctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaaccgg
gaaatgagcaaaacaagtgggcgactcaacaatggcatacctcagattccagtgaaaaga
ggggaatcggaatttgattctttcaggcagtctctgcctgtgtttgagaaacaagaagaa
attgttaaaataattaaggaaaataaagtagttttgattgtaggagaaactgggtctgga
aagactacgcagattcctcagttccttttagatgattgctttaaaaatggtatcccctgc
cgtatattttgtacccagccaagacggttagccgcaattgctgtggccgaaagagttgct
gcagagagaagagaaaggattggtcaaacaattggatatcagatccgattagaaagcagg
gtttctccaaagacacttctgacattttgcactaatggggtattgcttcgtacgttgatg
gcaggagatagtacattgtcaactgtgacacatgttattgtggatgaagtacacgaaaga
gatcgatttagtgattttttacttacaaagttaagagatctgttgcaaaagcacccaact
ttgaaacttattctttctagtgccgccttggatgtaaatctttttataagatattttgga
agttgtccagtgatacatatacagggaagaccatttgaagtgaaagaaatgtttctggaa
gacatcttaagaactactggatacacaaacaaagagatgttaaagtacaaaaaggaaaaa
caacgagaagagaaacagcaaactacccttacagaatggtattcggctcaagagaatact
ttcaagcctgagtctcagaggcagagaactgttcccagtgtgactgaagagtatgattta
ttggatgacggtggtgatgctgtcttcagccagttgacagaaaaagatgtgaattgcctt
gaaccatggttaataaaggaaatggatgcttgtctctctgacatatggctgcataaagat
gttgatgccttcgctcaggtctttcaccttattttaactgaaaatgttagtgttgattac
aggcatagtgaaaccagtgcaacagccctcatggttgctgcagggcgaggtttttcaagt
caagtagagcagttaattagcatgggagccaacattcacagtaaagcatcgaatggctgg
atggctttagattgggccaaacactttggacagactgaaatagtggatcttctagaatca
tacagtgcttcactggagtttggaaatctagatgaaagttctctggttcacacaaacgga
agtgacctcagtgcagaagacagagagctcctgaaagcttatcatcacagtttcgatgat
gaaaaagtagacttggatttgatcatgcaccttctttataatatctgtcatggttgcgat
gctggtgcaatattaattttcctacctggatatgatgaaattgttggactgagggatcgc
atcctgtttgatgacaagcggtttgctgacaacacacatagataccaagtctttatgctt
cattcaaatatgcaaacgtcagatcaaaagaaagtattaaaaaacccacctgccggtgtt
cgaaaaataatcctttccaccaatattgctgaaaccagcatcacagtcaacgatgttgtc
tttgttattgattctggtaaggtgaaagagaaatcctttgatgcactgaattttgttaca
atgttaaaaatggtgtggatttccaaagctagtgccatacaacgaaaaggcagggcaggg
agatgcagacctggaatttgtttccggctgttcagtagactccgattccagaatatgttg
gaatttcagactccagaacttttgagaatgccattacaggaactttgtttacatactaag
ctgttagctccagtgaactgtcctattgccgatttccttatgaaagctcctgaaccccca
ccagctttaattgtaagaaatgctgtacagatgcttaagacaatagatgcaatggatgct
tgggaggatctcactgagctgggatatcatttggctgacttgcccgtagagccacatctt
ggtaaaatggtcctgtgcgctgttgttttaaagtgtctggaccccatcctcacaattgcc
tgcacgctagcctatcgagacccttttgtcctgccaacccaggcctctcaaaaacgggca
gctatgctatgtagaaaacgcttcactgcagggactttcagtgaccacatggcccttctc
cgagcattccaggcatggcagaaagcacgaagtgatgggtgggagcgagccttttgtgaa
aagaattttctttcacaagctaccatggaaataatcattggcatgagaactcagttgctt
ggtcagcttagagcatcaggctttgttagggcacgaggtggcggtgacattcgagatgtt
aacacaaattccgaaaactgggctgtcgtcaaagctgcgttggtagcaggcatgtatcct
aatttagtccatgtggacagagagaatgttgtattgacagggccgaaggagaagaaagtt
cggtttcatcccacttcagttctcagccagcctcaatataaaaagattcctccagccaat
ggtcaggctgcagcgattcaggcactgcctacagattggcttatttatgatgagatgacc
agagcccacagaatagctaacattagatgttgttcggcagtgacccctgtcaccgttttg
gtattctgtggaccagcgaggctggcaagtaatgctcttcaggaaccttcatcgtttcga
gcagatggtattcctaatgacagtagtgacagtgaaatggaagatagaactactgctaat
ttagcagctttgaaacttgatgagtggctcaatttcaaactagagcctgaggcagccagt
ttgctgctgcagctccggcagaagtggcacagcttgtttttacgccgaatgagagctcca
tctaaaccctggtctcaggttgatgaggccaccataagagccatcatcgctgttctcagc
acggaagaacagtctgcgggcttacagcagccctcgggaataggccagaggccaaggcct
atgtcttcagaagaacttcctctggcatcatcttggaggtcaaataacagcaggaaaact
tcggcagatactgaattttcggatgagtctgctgctgcagaaagagtattggcgaaatct
ccatctccagcactgcacccccctcagaagtacaaagatagagggattttacatcctaaa
cgaagcactgatgaccgatcagatcagtcttctgtgaaatctacggacagcaatagctac
ccaagtccttgtgccagcccttctcctccatcctcaggaaagggctcaaaatctccttca
ccaagaccaaacatgcctattcgatacttcataatgaagagtagcaatttgagaaacctt
gaaatttctcaacagaagggtatctggtctacaacccctagtaatgagcggaagctaaat
cgagccttttgggaaagcagcatggtttacttggtattttctgttcaaggatctggacat
ttccagggattttctaggatgtcttctgagataggaagggagaagagccaggactggggc
tcagctggactgggaggagtatttaaggtggagtgggtccggaaggaaagtcttcccttt
cagtttgctcaccacttactcaatccctggaacgacaacaagaaagtccagatcagcaga
gacgggcaggaactagagcctcaggttggcgaacagttgctgcagctatgggaacgcctt
cccctgggagacaaaaccgcagccgactga
DBGET
integrated database retrieval system
