Lutra lutra (Eurasian river otter): 125100754
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Entry
125100754 CDS
T08100
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X1
KO
K24355
collagen type XXIII alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125100754
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
llv00536
]
125100754
Glycosaminoglycan binding proteins [BR:
llv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125100754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125100754
NCBI-ProteinID:
XP_047587126
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Position
5:complement(149933212..150243191)
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AA seq
531 aa
AA seq
DB search
MSSGQRAGGDARKDGPAGGGVGRPATAAGAWAVSAVCLLLSVGSAAACLLLGAQAAALQG
RVAALEEERELLRRAGPPSALAAWAEPHLERLLREKLEGLAKHRTVREAPTACVCPPGPP
GRRGKAGRRGDPGPPGPLGLDGKPGLPGPKGEKGAPGDLGPRGDQGRDGAAGPPGPPGPP
GARGPPGDTGKDGPRGAQGPAGPKGEAGRDGEMGLKGLPGPKGEPGIPGKKGDDGIPSQP
GLPGPPGPKGEPGNTGPPGENGVDGAPGPKGEPGQRGVDGVSGLRGPQGLKGEQGDTVVI
DYDGRILDALKGPPGPQGPPGPPGIPGAKGELGLPGAPGIDGEKGPKGAKGDPGEAGPTG
PKGEAGEMGLSGLPGTDGPKGEKGESASDSLRESLAQIIVAPGPPGPPGPPGPMGLQGIQ
GPKGLDGAKGEKGVSGDRGPSGLPGPAGPPGLIGLPGTKGEKGRPGEPGLDGFPGPRGEK
GDRSERGEKGERGVPGRKGMKGQKGEPGPPGLDQPCPVGPDGLPVPGCWHK
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgggccagcgcgccggcggcgacgcgcggaaggacggcccggcgggcggcggc
gtggggcgtcctgcgacggcagccggggcctgggcggtgagcgccgtgtgcctgctgctc
tccgtgggctcggcagccgcctgcctgctgctgggcgcccaggcggccgctctgcagggc
cgggtggcggcgctcgaggaggagcgggagctgctgcggcgcgcggggccgccgagcgcc
ctggctgcctgggccgagccgcacctggagcgccttctgcgcgagaagttggagggactg
gccaagcaccggacagttcgggaagcaccgaccgcgtgtgtctgcccaccaggccctcct
ggacggcgcggcaaggctggaagaagaggcgaccccggtcctcccgggccgctgggtctg
gatggcaagcccggacttccaggccccaaaggggaaaagggcgcaccaggagaccttggc
cctcggggagaccaagggcgagatggagctgctgggcctccagggccccctggaccccct
ggagcccggggccctcctggcgacacggggaaggatggccccaggggagcacaaggccca
gcgggtcccaaaggagaggctggacgtgacggcgagatgggcctgaagggactcccaggg
cccaagggtgagcctggcattcctggaaagaagggggatgatgggattccaagccagcca
gggctccccggacccccaggccctaagggcgagccagggaacacggggcctccaggagaa
aatggtgtggacggcgccccagggccaaagggagagcccggccagcgaggcgtggatgga
gtctcaggacttcggggtccccagggcctcaagggtgagcaaggagacacggtggtgata
gactacgatggcaggattctggacgccctcaagggtcctcctgggccacaggggcctcca
gggcccccagggatccccggagccaagggtgagctgggattgcctggtgccccaggaatc
gacggagagaagggtcccaaaggagccaaaggagacccaggagaggctgggccaaccgga
cccaaaggggaggcaggcgagatgggcctgtcaggcctcccgggcaccgacgggcccaag
ggggagaagggagagtcggcatctgacagtctacgagagagcctggcccagatcatagtg
gcaccagggccccccggcccccctggtcccccaggccccatgggccttcagggaatccag
ggtcccaagggcttggacggagcaaagggagagaagggtgtgtcaggtgacagaggcccc
agcggcctgcctgggccagctggcccgccaggtcttattgggctgccgggaaccaaagga
gagaagggaagacctggggagccaggactagatgggttccctggaccccgaggagagaaa
ggtgaccggagtgaacgtggagagaagggggagcgaggtgtcccaggccggaaaggcatg
aagggccagaagggtgagccgggaccgccaggcctggaccagccgtgtcctgtgggcccg
gatggactgcccgtgcctggctgctggcataagtga
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