Lutra lutra (Eurasian river otter): 125100813
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Entry
125100813 CDS
T08100
Name
(RefSeq) transcription factor SOX-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04390
Hippo signaling pathway
llv04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
125100813
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
125100813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
llv03000
]
125100813
Transcription factors [BR:
llv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125100813
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
125100813
NCBI-ProteinID:
XP_047587216
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Position
1:105948980..105951514
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AA seq
321 aa
AA seq
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MYNMMETELKPPGPQQTSGGGGGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQR
RKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKT
KTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQD
QLGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMA
LGSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQ
HYQSGPVPGTAINGTLPLSHM
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacatgatggagacggagctgaagccgccgggcccgcagcaaacttcggggggc
ggcggcggcggcggcggcggcaactccaccgcggcggcggcgggcggcaaccagaagaac
agcccggaccgcgtcaagcggcccatgaacgccttcatggtgtggtcccgcgggcagcgg
cgcaagatggcccaggagaaccccaagatgcacaactcggagatcagcaagcgcctgggc
gccgagtggaaacttttgtcggagacggagaagcggccgttcatcgacgaggccaagcgg
ctgcgagcgctgcacatgaaggagcacccggattataaataccggccccggcggaaaacc
aagacgctcatgaagaaggataagtacacgctgcccggcgggctgctggccccgggcggc
aacagcatggctagcggggtcggggtgggcgccggcctcggcgcgggcgtgaaccagcgc
atggacagctacgcgcacatgaacggctggagcaacggcagctacagcatgatgcaggac
caactgggctacccgcagcacccgggcctcaacgcacacggcgccgcgcagatgcagcct
atgcaccgctacgacgtaagcgcactgcagtacaactccatgaccagctcgcagacctac
atgaacggctcgcccacctacagcatgtcctactcgcagcagggcaccccaggcatggcg
cttggctccatgggctcggtggtcaagtccgaggccagctccagcccccctgtggttacc
tcttcctcccactccagggcgccctgccaggccggggacctccgggacatgatcagcatg
tacctccccggcgccgaggtgccggagcccgccgcccccagcagacttcacatgtcccag
cactaccagagcggcccggtgcccggcacggccattaacggcacactgcccctctcgcac
atgtga
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