Lutra lutra (Eurasian river otter): 125101876
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Entry
125101876 CDS
T08100
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125101876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125101876
Enzymes [BR:
llv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125101876
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125101876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
125101876
NCBI-ProteinID:
XP_047588363
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All DBs
Position
6:146179562..146199994
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AA seq
531 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRHS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDW
MTLPGITGFQAFEVQLVLRQALPDIWTVPRDQGIIVKKVSKQHRWYLENTSCDRASCWKE
KILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLNIHSLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTRNSGPVVIHASKCEKYVETKYPH
EAAYDAFLCGSVLLKVAHLLAWRVHGASPMPEPSFPLYLNVLAPYVNQVNLIRAGVPKIN
FSGPDCPSIRPPILLLHVRKWPGVSEQQVYREFQNLCKFDVRRLSRSQFLLLTNKFKDAR
SILKEYRGHPTLQVSLYRYWRHSPNISCLLQVCGVVTTWALLALLLGRPGH
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgggcgccgacgagttcgagcagagtctccctctgctgcaggagctcgtcttg
ggcgctgacttcgtgggtctggacatagagttcacgggccttcgctctaacctgtcgcgt
ccccagcagatcagtctctttgacttgccctcggagtggtatctaaaaacccgccacagt
gtccagcagttcacaatctgtcagattggattgtctgtgttttccagtattgaaggagag
tcaaacaagtatgtagcccattcgtgtaacttctttctcttcccgacgacatttgggata
ttggattcagaattctctttccaggcttctagtgttcagtttttgaatcaatatggcttc
gactacaacaagtttctcaaaaacgggatcccgtatatgaatgaagagcaggagaagaaa
attaaacacaacattctgactggaaactggaaagttcgcagttctctggataaagaccag
atcaaggtggtgatcgatgaggtgacgcggtggctggacttggcagaggagggcgactgg
atgactctccctggtataactggcttccaggcttttgaggtccagctggtgctgaggcag
gccctccccgacatctggacggtcccaagagaccaggggataatagtgaaaaaagtgagc
aaacagcatcggtggtatcttgagaacacctcctgtgatcgagcgagctgttggaaggag
aagattcttctctctgccaggggtttttcagtgtttttccagatgctggtgaaagcccaa
aagcccttagtgggccacaacatgatgatggacctgctgcatctccacgagaagttcttc
aggccactcccagaaagctatgatcagtttaagctgaacatccacagcctgtttcctgtt
ctcattgacaccaagaacgtgaccaaggatatctggaaggaactgaatttcccaagggtt
tcaaatctttcagaagtttatgaggtcctaaacagtgacttgaatcctaccagaaattcc
gggccagtggtcattcacgcgagcaagtgtgaaaaatacgtggagaccaagtacccccac
gaggccgcgtacgatgccttcctctgtggatcagttcttctgaaagtggcccacttgctc
gcatggagagtacacggtgccagccccatgccagagccctccttccctctgtacctcaac
gtgctggctccctatgtgaaccaggtgaatctgatccgagccggggtccctaagattaat
ttctcaggtccagattgccccagtatccgacctcccatcctcctcctccatgtccggaag
tggccgggggtcagcgagcagcaggtctaccgtgagtttcagaatctctgcaagttcgat
gtgcggcgactctcgcggagccagttcctgcttttgaccaataagtttaaggatgctcgg
agcatcctgaaggagtaccggggccaccccaccctgcaggtgtccctgtaccggtactgg
aggcactccccgaacatcagttgcctgttgcaggtctgtggcgtggtcaccacctgggcc
ctcctggcgcttctcctcggaagacctggccactga
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