Lutra lutra (Eurasian river otter): 125102282
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Entry
125102282 CDS
T08100
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125102282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
llv03041
]
125102282
Spliceosome [BR:
llv03041
]
Complex C
Other components
Step II factors
125102282
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
WDR54
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
125102282
NCBI-ProteinID:
XP_047589268
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Position
6:131671840..131717140
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AA seq
579 aa
AA seq
DB search
MSAAIAALAASYGSGSGSESDSDSEGGRCSLPAADSLMHLTKSASTKPSLAVAVDSAPEV
AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSTKYIGSVEEAEKNQGLTVFETGQKKIEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTI
LHVKEMYDYQGRSYLHIPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgcgattgcagctctggctgcgtcctacggttcgggttcagggtccgaatcg
gactcggacagtgagggcggtcggtgttccctgccagctgccgactccctcatgcacttg
acgaaatcagcttcgaccaaaccctctctggcagtggcggtggactccgctccggaggtg
gcagttaaggaagatttggagactggagttcaccttgaccctgctgtcaaagaagttcag
tataatcctacctatgagaccatgtttgctcctgagtttggaccagaaaatccctttagg
acacagcagatggctgcccctaggaatatgctttctgggtatgctgaaccagctcatatc
aatgattttatgtttgaacagcaaagaagaacatttgccacatacggttatgcattagac
ccttcattagataaccatcaagtgtctactaaatatattggttcagtagaagaagctgaa
aaaaatcaaggtttaaccgtgtttgaaactggtcagaaaaagatagagaagaggaaaaag
ttcaaagaaaatgatgcatctaatattgatggtttcttgggaccatgggcaaaatatgtg
gatgaaaaggatgtagccaaaccctcagaagaagaacaaaaagaattggatgaaattaca
gcaaagaggcagaaaaaaggcaaacaggaagaagagaaacctggggaggagaagacaatt
ctacatgttaaagaaatgtatgactaccaaggtagatcctatcttcacatacctcaggat
gttggtgttaatcttcggtcgactgtgccacctgagaagtgttaccttcccaaaaagcaa
attcatgtgtggtctggacatacgaagggcgtcagtgctgtcagattatttcctctatct
ggccatttattgctgtcttgttccatggactgtaaaatcaagctctgggaggtttatgga
gacagacgctgtctgcgaacatttattggccacagcaaagccgttagggatatctgcttt
aatactgcagggacgcagttcctcagcgcagcttacgacaggtaccttaagctctgggac
acggagacaggacagtgtatatcaagatttacaaaccgaaaagtgccctattgtgtcaaa
tttaatcccgatgaagataagcaaaatctctttgtagctggtatgtctgataaaaagatt
gtgcagtgggacattcgaagtggggaaattgttcaggagtatgaccggcacttgggggcc
gtcaacaccattgtttttgttgacgagaacaggagatttgtgagcacatctgatgataag
agcctaagagtttgggaatgggacatccctgtggatttcaagtacatagcagagcccagt
atgcactcgatgcctgcggtgactttgtctccaaacgggaaatggctagcctgccaatcg
atggacaaccaaatcttaatttttggagcacagaacagatttagattgaataagaaaaaa
atttttaagggccatatggtagcgggttatgcttgtcaggtggacttttcaccagacatg
agctatgtgatttcaggagatggcaatggaaaactgaacatctgggactggaagacgaca
aaactctacagtcgatttaaagctcatgataaagtgtgtataggggcagtgtggcaccct
catgaaacatctaaagtcataacgtgtggttgggatggtctcattaagttgtgggattaa
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