Lutra lutra (Eurasian river otter): 125102349
Help
Entry
125102349 CDS
T08100
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04120
Ubiquitin mediated proteolysis
llv04137
Mitophagy - animal
llv04141
Protein processing in endoplasmic reticulum
llv05012
Parkinson disease
llv05014
Amyotrophic lateral sclerosis
llv05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125102349
04120 Ubiquitin mediated proteolysis
125102349
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
125102349
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
125102349
05014 Amyotrophic lateral sclerosis
125102349
05022 Pathways of neurodegeneration - multiple diseases
125102349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
llv04131
]
125102349
04121 Ubiquitin system [BR:
llv04121
]
125102349
03029 Mitochondrial biogenesis [BR:
llv03029
]
125102349
Enzymes [BR:
llv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
125102349
Membrane trafficking [BR:
llv04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
125102349
Aggrephagy
Other aggrephagy associated proteins
125102349
Xenophagy
Other xenophagy associated proteins
125102349
Ubiquitin system [BR:
llv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
125102349
Mitochondrial biogenesis [BR:
llv03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
125102349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Rad60-SLD_2
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
125102349
NCBI-ProteinID:
XP_047589426
LinkDB
All DBs
Position
6:complement(147041343..148416374)
Genome browser
AA seq
464 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVESDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDLTVQSCD
LDQQSIVHVVLRPWREDQGGAATGQEGPQNATVGSEREPESLTRVDLSSSVLPSHSGGLA
VILNSDDARTLPVGRPAGRRTYNSFYVYCKGPCRRVQPGKLRVQCSTCQQATLTLAQGPS
CWDDVLIPNRMTGKCQSIHCSGTTAEFFFKCGAHPTSDKDTSVALNLITTNSRDITCITC
TDVRSPVLVFQCNHRHVICLDCFYLYCVTRLNDRQFIPDLQLGYSLPCVAGCPSSLIKEL
HHFRILGEEQYNRYQQYGAEECVLQMGGVLCPSPGCGAGLLPEPGMRKVTCEGGSGLGCG
FVFCRDCKEAYHEGECGTLFEASGAVTQAYRVDQKAAEQARWEEASKDTIKKTTKPCPRC
HVPVEKNGGCMHMKCPQPQCGLEWCWACSCEWNRACMGDHWFDV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgtcaggttcaactccagccatggtttcccagtggaggtcgagtccgac
accagcatcttccagctcaaggaggtggttgctaagcgacagggggttccagctgaccag
ttgcgtgtgattttcgctgggaaggagcttcggaatgacttgacagtgcagagctgtgac
ctggatcagcagagcatcgtccacgtggtgctgagaccctggagggaagaccaaggaggg
gcggccactggacaggaaggcccacaaaacgccacggtgggctcggagagagagcctgag
agcttgacgcgcgtggacctcagcagctccgtcctcccgtcccactcggggggtctggcc
gtgatcctgaacagtgacgacgccaggaccctgccagtcggaaggccagcaggtagacga
acctacaacagcttttatgtctattgcaaaggcccctgtcggagagtacagccgggaaaa
ctccgggtacagtgcagcacctgccaacaggcaacgctcaccttggcccagggtccatct
tgctgggatgatgtcttaatcccaaaccggatgaccggcaaatgccagtctatacactgc
tctgggactacagccgaatttttctttaaatgtggagcacacccgacctccgacaaggac
acgtcagtagctttgaacctgatcacaacaaacagtcgagacatcacctgcatcacctgt
accgacgtcaggagccctgtcctggttttccagtgcaaccaccgtcacgtgatttgctta
gattgtttctacttatattgtgtgacaagactgaatgaccggcagttcatccctgacctt
cagctcggctactctctgccttgtgtggctggctgccccagctccttgattaaagagctc
catcacttcaggattcttggagaagagcagtacaaccggtaccagcaatatggtgctgaa
gagtgtgtgctacagatggggggagtgctgtgccctagccctggctgcggagcagggctg
cttcctgagccgggcatgaggaaggtcacttgtgaagggggcagtggtctgggctgtggg
ttcgtcttctgccgggactgtaaggaggcgtaccatgaaggtgaatgcggcaccctcttt
gaagcctcaggagcagttactcaggcttaccgagtcgaccagaaggccgcggagcaagct
cggtgggaagaggcctccaaagacacgatcaagaaaaccaccaagccctgtccccgctgc
catgtgcccgttgagaaaaatggaggctgcatgcacatgaagtgtccgcagccgcagtgc
gggctggagtggtgctgggcctgcagctgcgagtggaaccgcgcctgcatgggggaccac
tggttcgacgtgtag
DBGET
integrated database retrieval system
