Lutra lutra (Eurasian river otter): 125102436
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Entry
125102436 CDS
T08100
Name
(RefSeq) nuclear pore complex protein Nup153-like isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03013
Nucleocytoplasmic transport
llv03250
Viral life cycle - HIV-1
llv05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125102436
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
125102436
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
125102436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125102436
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125102436
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Nup_retrotrp_bd
Motif
Other DBs
NCBI-GeneID:
125102436
NCBI-ProteinID:
XP_047589629
LinkDB
All DBs
Position
6:10449259..10519396
Genome browser
AA seq
1483 aa
AA seq
DB search
MASGAGGIGGGGGGKIRTRRCHQGPIKPYQQGRQQHQGILSRVTESVKNIVPGWLQRYFN
KNEDVCGCSSDTREVPQWPENRDDDHLVYADEESSNIHDGRITPEPTVSNTEEPSTTSTS
SNYPDVLTRPSLHRSHMNFSMLESPALHCQPSTSSAFPIGSSGFSLVKEIKDSTSQHDDD
NISTTSGFSSRASDKDIAVTKNTSVPPLWSPEAERTPSLSQHTATSSKKPAFNLSAFGTL
SPSLGNSSILKTSQLGDSPFYPGKTVYGGAAAAVRQPKLRNTAYQAPVRRQMKAKQLSAQ
SYGVTSSTARRILQSLEKMSSPLADAKRIPSVVSSPLNSPLDRSGIHTTADFQAKRERVD
SPYPPVQRLMTPKPISIANRTVYFKPSLTPSGELRKTNQRIDKKHSTGYEKPVTPGQTRE
QRESGFSYPNFSMSAANGLSSGVGSGGGKMRRERTRFVASKLQEEEEMEVPVLPKISLPI
TSSSLPTFNFSSSVITTSSPSPISPSQSLTNKVQMTSPNSTGSPMFRFSSPIVKSTEADL
LPPSSFLQIGFIFSVPVAKTAELSGSSSISEPMTSTSSAQDISAVNSTSCKEKPDEDCEG
PFRATKTLKEGSVLDVLKSPGFASPKADSLAAQPPTTSPVVYTRPAISSFSSSGIGFGES
LKVGPSWQCDTCLLQNKLTDSKCIACQAAKLPPKETAKQTGIFGAPSKSDRSALPSSGTG
LGDKFKPAVGTWDCDTCLVQNKPEAIKCVACETPKPGTGVKRVLTLPTAPESAATAAAAP
ATCTVTTAALGFAEQFKRPVGSWECPVCCVFNNGEDSKCVSCVSEKPGSSVPASSSSTVP
TSLSPGSCLGLDKFKKPEGSWDCEVCLVQNKADATKCVACESAKPGTKSEFKGFGTSSSS
SNPAASSFKFGIPSSSSGPSQTLTSTGNFKFGDQGGFKIGVSSDSESPNSVSEGFKFPKP
LGDFKFGVSSETKPEEAKKDSKSENDFKFGLPSGVSNTASLALFQFGVSNLGQQEKKEEL
PKSSSAGFSFGPGVINPTPAATNTAVTSESKSSFSFGTLETKSVSVAPFTCKTSEAKKEE
MPATKGGFTFGSIEPAPPPAASLFALGRTEEKQQEQVTSTSLVFGKKADSEEPKCPSVFS
FGNSEQTKEESSSKSTFSFSVAKPAEKESEQPTKAAFTFGTPTNTTADPGAAKPAFTFLN
SSAPTSSAPAPAAAGGMFGSSAAASSTPGTAFVFGQAGNPGSGPAFGSAAESGASPSLLF
SQESKPATTSSAATAVTPFVFGPGASSHSTATSGFSFGATTTSSSAGSSFVFGTGPSAPS
ASPAFGVNQTPTFGQSQGASQPTPPGFGALSSSAALFSAAPQPTPPTFGSVSSSSQPPVF
GQQPSQSAFGSAAAPSSGSSVFQFGSSSTTNFNFANNNPSGVFTFGANPGTPAASAQPSG
SAAFAFSQSSAAFTVGSNGKNMFSSSGTSVPGRKIKTAVRRRK
NT seq
4452 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggagccggaggaataggagggggcggtggcggcaagatccggacgcggcgt
tgccaccaggggccaattaagccttaccagcaggggcgacaacagcaccagggcattctt
agcagggttacagaatctgttaagaatattgtgccaggatggttacaaagatacttcaac
aagaatgaagatgtatgtggctgctcgtcagacacaagagaggttccacagtggccagaa
aatagagatgatgatcatctggtctatgctgatgaggagagctctaatattcatgatggg
agaatcactcctgagccaacagtcagtaatacagaagaaccctcaacaactagtacttct
tcaaattacccagatgtattaacaaggccttctcttcatcggagccatatgaatttctcc
atgttggaatctcctgcattacactgtcagccctccacatcctcggcattcccaattggc
agttctggattttcccttgtaaaggaaattaaagattctacctctcagcatgatgatgat
aacatctcaactaccagtggtttttcttcaagagcttctgataaagatatagctgttacg
aagaacacttcagtgccacctctgtggtccccagaggctgaacgtactccttcactctca
cagcacactgccaccagctcgaaaaaaccagcattcaacttgtctgcctttggaacactt
tccccttcacttgggaattcttcaatccttaaaacaagtcaacttggagattctccgttt
tatcctggaaaaacagtgtatggtggggcagcagctgctgtaagacagcctaaactacga
aacacagcatatcaggcaccagtcagaagacagatgaaagctaagcagctcagtgcacaa
tcctatggtgtgaccagttcaacagctcggcgaatattgcagtctttagagaagatgtca
agcccgctagcggatgcaaaaagaattccatctgttgtttcttctcccttgaattctcct
ctggataggagtggaatacataccactgcagactttcaggccaaaagggaaagggtggac
tctccgtatcctcctgttcagagactcatgaccccaaagccaatttccatagcaaatcga
actgtttattttaaaccatctctgaccccgtctggtgaattaaggaagactaatcaaaga
atagataaaaagcacagtaccgggtatgaaaaacctgtgacgccaggacaaactagagaa
cagcgagaaagtggcttttcttatccaaatttcagtatgtctgcagccaatggtttatct
tctggagtaggtagtggaggcggcaagatgagacgagagagaacgcgctttgttgcatct
aagcttcaggaggaggaggaaatggaagtaccagtattgccgaaaatctctctacccatc
accagttcttcactgcctaccttcaattttagttcctctgtgatcacaacgtcctctcca
tcacccattagtccttcacaatcattaacaaacaaggtacaaatgacctctccaaacagc
actggcagccccatgtttcgattttcatctccaattgtaaaatctactgaggcagattta
ctacctccatcatcttttttacagattggatttatattcagtgtgcctgttgcaaaaaca
gcagaactttctggctctagtagtatttcagaaccaatgacaagtactagttcagctcaa
gatatcagtgcagtgaatagtacaagctgtaaggagaagccagatgaagattgtgagggc
ccttttagagctacaaaaaccctgaaagagggaagtgtcctcgacgttctcaaaagccct
ggttttgcatcaccgaaggcagattctcttgctgctcagcctcctaccacaagccccgtt
gtttatacaagaccagcaataagtagcttttcttctagtggcatcgggtttggggaaagt
ttaaaagttggaccgtcgtggcagtgcgatacttgtctactccagaacaaacttacagac
agcaagtgcatcgcctgtcaggcggcaaagctgccgcccaaagagactgcgaaacaaact
ggaatctttggagcaccgagtaaaagtgacagatccgctcttccctcctcagggacgggg
ttgggagacaaatttaaaccggcagtaggcacttgggattgtgatacctgcttagtgcag
aataaacctgaggcgataaaatgcgtggcctgtgaaaccccgaagcccgggaccggtgtg
aagcgagtccttacactgcccacggctccggagagcgcggcgactgcggctgccgcccct
gccacgtgcactgtgaccactgccgccttagggtttgcagagcagtttaaaaggcccgtg
ggctcttgggagtgtccagtatgctgtgtttttaataatggcgaagacagcaaatgtgtg
tcctgtgtgtctgagaagccaggaagttcggtacctgcttcaagtagcagcactgtcccc
acctctctgtctcctggaagctgcttggggttagacaagttcaagaaacccgagggcagc
tgggactgtgaagtgtgcctggtacagaataaagcagatgctactaaatgtgtggcgtgc
gaaagtgcaaagccgggcacaaaatctgagtttaaaggctttggcacatcttcctcatct
tcgaacccagcagcctcatccttcaaatttggtatcccatcatcctcttctggaccttct
cagaccttaacaagcactggaaattttaagtttggagatcagggaggcttcaaaatcgga
gtgtcctcagattctgagtctccaaactccgtgagtgaaggctttaaatttcctaaacca
ttaggagattttaaatttggagtttcgtctgagactaaacctgaagaagctaaaaaggac
agtaagagtgagaacgattttaagtttggacttccttcgggcgtaagtaacacagcttcg
ttagctctgtttcagtttggcgtgtctaatctcgggcagcaggagaagaaagaggaacta
cctaagtcttcgtctgcgggcttcagctttggtcctggtgttattaaccccacacctgct
gctaccaacaccgcggtgacctctgagagcaagagcagcttcagctttggaaccctagaa
accaagagtgtttcagtggctcctttcacctgtaagacgtcagaagccaaaaaagaagaa
atgcctgccaccaaaggagggttcacgtttggcagcatagaacccgcccctccgccagct
gcctcgttgttcgcactgggaaggacagaagagaagcagcaggagcaggtcacttccact
tctctggtgtttgggaagaaagctgacagtgaagagccaaagtgtccatcagtgttttcc
tttggaaattcagagcagaccaaagaggagagttcttcaaagtccacctttagtttcagc
gtggcaaaaccagctgagaaggaatcggaacaaccaacaaaggctgctttcacatttgga
acgccaaccaatactacggcagatccgggggccgcgaagccggcgttcaccttcttgaac
agcagcgcccccacgtccagcgcgccggccccggccgccgcggggggcatgttcgggagc
tccgctgccgcctccagcacgcctgggactgcctttgtgtttggacaggccggcaaccct
gggagcggccctgccttcgggagcgcggccgagtcgggcgcgtctccgtcgttgctgttt
tctcaagagagcaaaccggcaaccacgtcgagcgcggccacggccgtcaccccgttcgtc
tttgggccgggagccagcagccacagcaccgccacctccggcttcagtttcggagccacg
accacatccagctctgcaggatcctcctttgtatttggcacggggccttcggcgccatct
gccagtccagcatttggtgttaaccaaaccccgacatttggacagagtcaaggtgccagc
cagcccactcccccaggctttggagctctgtcctcgtcagcggcgttgttttctgctgcc
cctcagcccacaccacctaccttcgggagcgtgtccagcagcagccagcctcctgtgttt
ggacagcagccgagtcagtctgcctttggctccgcagcagctccgagttccggttcttca
gttttccagttcggcagcagcagcaccaccaatttcaacttcgcgaacaacaacccgtcg
ggagtgttcacgttcggggcgaatcccggcacccccgccgcctcggcccagccctccggc
tccgcggccttcgcgttcagccagtcttcggccgcgttcacagtggggtcaaacgggaaa
aatatgttctcttcttccggaacttcggttcctggtcgcaagataaagactgctgtcagg
cgcaggaaataa
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