Lutra lutra (Eurasian river otter): 125104346
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Entry
125104346 CDS
T08100
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125104346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125104346
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125104346
U7-dependent histone pre-mRNA processing factors
125104346
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
125104346
NCBI-ProteinID:
XP_047592941
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All DBs
Position
7:complement(117028610..117061077)
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AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
EMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatctattatcaaattaactaccctctctggggttcaagaagagtctgctctttgc
tatcttctgcaagttgatgagtttagatttctgttggactgtggctgggatgagcacttt
tctatggatattatagattccctgaggaagcatgttcaccaaattgatgcagtacttttg
tcccaccccgatcctcttcatctcggtgccctcccctacgcagtcgggaagctgggtctg
aactgtgccatctatgcgaccattcctgtttataaaatgggacagatgttcatgtatgat
ctttaccagtctcgacacaatacggaagactttaccctctttacgttagatgatgtggat
gcagcctttgataaaatacagcagttaaaattctctcagattgtgaatttgaaaggtaaa
ggacatggcttgtctatcacacctctgccagctggtcatatgataggtggaacaatatgg
aaaatagtcaaagatggagaagaagaaattgtctacgcagttgactttaaccacaagagg
gagattcatttaaatggatgttccttggaaatgctaagcagaccctccctgcttatcaca
gattcctttaatgccacatatgtgcagcctaggagaaaacagagagatgagcaacttctg
acaaatgtcctggaaacacttcgaggtgatggaaatgtattaatagcagtggacactgca
ggcagagttttggaacttgctcaactccttgatcaaatctggagaactaaagatgcaggc
ctgggtgtctattcgctggcactcctaaataatgtcagctataatgtggtggagttttcc
aagtcccaggtagaatggatgagtgacaaattgatgagatgttttgaagacaaaagaaat
aatccatttcagtttcgccatctctctttatgtcacggtctttccgacttggctcgggta
cctagccccaaagtggtactcgccagccagcctgacctggaatgcggattttcaagggat
ctcttcattcagtggtgtcaggaccctaaaaactcaatcattctaacttacagaactact
cctgggactttagcccgtttcttaattgataatccttctgaaaaaattacagaaatagag
ttgaggaaacgtgtgaagcttgaagggaaagaactagaagaatacttagaaaaagagaaa
ctaaagaaagaagcggcgaaaaaactagagcagtcaaaagaggcagacatagattccagt
gatgagagtgatgttgaggaagacattgatcagccatcggctcacaagactaaacatgac
ctgatgatgaaaggtgaaggtagtcgtaaaggaagtttcttcaaacaggctaaaaagtct
taccctatgtttcctgccccggaagaaagaattaaatgggatgaatatggagaaattatc
aaaccagaggatttcttagtgccagaacttcaagcgactgaagaagagaaaagcaaatta
gaatctggcttgacaaacggagatgaacccatggatcaggatttatctgatgttcctacc
aagtgtatttctacgacagagtctatcgaaataaaagccagggttacttatatagactat
gaaggacgctccgatggagattccattaaaaagattattaatcagatgaaaccacgacag
ctgatcattgtccacggaccaccagaggctagtcaggatctcgcagagtgctgtcgtgca
ttcggtgggaaagatattaaagtgtacatgccaaagctacacgaaacagttgatgccact
agtgaaactcacatctaccaggtgagattgaaagattcacttgtcagctcccttcagttt
tgcaaggcaaaagatgccgaattagcttggatagatggtgtcttggatatgagagtttcc
aaagtggacacaggagttattttagaagaaggagaactgaaggatgatggagaggactca
gaaatgcaagtggacgctccttcggattccagcgttatagcacaacagaaagccatgaag
agtctgttcggagatgatgagaaagagacaggcgaagagagcgagatcattccgaccttg
gaacccttacccccccacgaggttcctggacatcagtcagtttttatgaacgaaccaaga
ctgtcagacttcaagcaagttcttttacgggaggggattcaagctgaatttgtaggaggt
gtacttgtttgcaacaaccaagtagcagtccgtagaacggaaactggacgcattggatta
gaaggctgcctttgtcaagatttttataggataagagaccttttatatgaacagtatgcc
attgtgtaa
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