Lutra lutra (Eurasian river otter): 125104592
Help
Entry
125104592 CDS
T08100
Name
(RefSeq) collagen alpha-5(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04151
PI3K-Akt signaling pathway
llv04510
Focal adhesion
llv04512
ECM-receptor interaction
llv04820
Cytoskeleton in muscle cells
llv04974
Protein digestion and absorption
llv05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125104592
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125104592
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125104592
09142 Cell motility
04820 Cytoskeleton in muscle cells
125104592
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125104592
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
125104592
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
llv04147
]
125104592
00536 Glycosaminoglycan binding proteins [BR:
llv00536
]
125104592
Exosome [BR:
llv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125104592
Glycosaminoglycan binding proteins [BR:
llv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125104592
Hyaluronan
Extracellular matrix or blood plasma proteins
125104592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
VWA_CoxE
Copine
Motif
Other DBs
NCBI-GeneID:
125104592
NCBI-ProteinID:
XP_047593117
LinkDB
All DBs
Position
1:complement(134242227..134338775)
Genome browser
AA seq
2602 aa
AA seq
DB search
MKILLITLILILWTETLADHSPEPGPEYADVVFLVDSSDHLGTKSFPFVKTFLNKMISSL
PIEAHKYRVALAQYSDQFHNEFQLSTFRNRNPMLNYLKKNFGFMGGSLRIGHALREAHRT
YFSAQAGGRDKKQFPPILVVLASAESEDDVEEASKALREDGVRIVSVGLQDASEEQLKAM
ATAQFHFNFRSVRDLGAFSQNMTQIIKEATQYRDGAADIQVSFPVACQKDSLADLVFLVD
ESVGTRQNLRNLQNFLRNITASMDVSYNCTRLGLMSYSDRAKTISFLNSSTTQYEFQEQI
QKLSIQAGKSNAGAAIEKMRLEAFSESSGSRRAQGVPQIAVFVTHRPSTDEVRDVAIQLR
LQDVTVFGMNIQGANDVQLEEIVSYPPRQMVSKLESYADLEAYSKNFQKKLQNEIWSQIS
TRAEGMDLDRTGCMDTKEADIYFLIDGSTSIQKKHFGQIKQFMLAVTGMFSIGPDKVQVG
AVQYSHKMKVEFSINDGSNNVNLRNAILNIEQLKGRTHTGEALDFVLSIIKEDKKHRARQ
VPCYLIVLTDGRSADEVLEPAERVRAEQVTIHAVGIGEANKAQLQQIAGGEERVSFGQNF
DALRSIKNEVVHRICKEKGCEDMKADIMFLVDSSSSIGHDNFGKMKTFMKNLLAKIQIGP
DRTQIGVIQFSDQTQEEFQLNKYFTQNEISDSIDRMSLIDKNTLTGNALTSIDEYFTPAK
GARAMAKKFLILITDGEAQDPVRDPAKALRDKGVVIFSVGVYGANRTQLEEISGDGNLVF
QVEKFDDLKTIESKLIFRVCALHDCKNIKVLDIVFVLDHSGSINTEEQESMMNLTIHLVK
KADVGSARVRIGALKYSEYPEVLFHLGKYSNGSAVIEHLRRRRDTGGRTFTAKALDHTNI
MFTEEHGSRIQQNVKQMLIIITDGESDDRNRLNDTALKLRNKGIDIYAVGVGKANQLELE
AMAGNKNNTFHVDNFNKLKDLYQPLQERMCTSAREPCDVQEADMVFFFDGSDMVSHSEFV
TMTTFVSDLIDNFNLQNQRIKIGLAQFGSGFQKIIELKNSLTIPKLKTRIQTITKSNGFP
RIDLALKKVKVMFDPSSGGRRNAGVLQTLVVITSRDPYYNVADEVKVLRNLGICVLVWGI
GDVHKEQLLPMTGDSRKIITLKDFNTLMDVDMKKRMVREICQSCGTTNCFMDIVVGFDIS
THLLGQPLFYGHPLLESYLPSILEDITSIGRVSCGAGTEVLVNVAFKVNNDPAKFQLYQR
AIFDSLQQVNVDGPTHLNAQFLQSLWETFNDRPKSHGQVLLIFSDGLGGESEIMLEDQSD
RLRAAGLDALLVVSLNTTAHDEFSSFEFGKGFDYRTHLTIGMRELGKMLSQYLGNVAEKT
CCCTFCKCLGDPGPRGSQGLQASKGFPGLKGSRGHRGDDGDPGRRGDFGPPGDKGIAGCP
GEHGQKGTKGFSGSKGEQGEDGVDGLDGEEGFRGFPGEKGEKGDPGSQGSPGSRGPPGGY
GEKGFQGDPGNPGQNSNIKGQKGSKGEQGRQGTPGQKGTPGSPNSRGNRGREGVRGPPGA
SGEPGNRGPQGVPGTNGLQGPQGLDGIPGRKGEKGSEGHKGPQGSSGPVGAKGNIGSPGP
SGKKGEPGILGDPGPMGQVGQRGRQGDYGIPGYGQMGRKGVKGPRGLPGDMGQKGAVGDP
GIPGGPGPKGFRGLTLTVGLKGEQGPPGPLGPPGRRGMKGMAGKPVYSQCDLIQFLRDHS
PCWKEECPVYPTELVFALDQSYDISEQRFDEMREVITSIINDLNIRESNCPVGARVVVVS
YDSGTSYLIRGSDYRNKKQLLQLISQLKYQTPTEAQDIGNAMRFVARNVFKRTHAGANVR
KVAVFFSNGQAASRSSIITATMEFSALDISPAVFAFNERTFLEAFEFDDTGTFQVIPVSP
NESLEKFRHCTLCYDKCFPIACIKEIFLPENSYMDVAFLLDNPSTIANNEFNAVKTLVSS
MIDNFNIASDPRISDFGDRIALLSYSPWDNSRRKKAVVKTEFGFTTYNSGVLMKRHIQSS
LQQLKGEATIGHTLLWAVENLFPQTPNLRKHKVIFVISAGEYHERKEFLKKVALRAKCQG
YVIFVISLGSAYKEDMEELASYPLDHHLIHLERIHKPDLDYITKFLKPFVYSVRRGFNEY
PPPELENACRLITEEAYQNSDLLFTPEPHDISSGENSFIGQELSAGKDSSFVLEDIGSDS
LVYIPSHMLMPQELKITQKKGHNSEEIASLTSGHENHGRKEEPGLTNEPGDTSLQEYYMD
VAFLIDASQRIGNDEFQEVKAFLISVLDYFRVASYPLTSMLGDRVAVVSYSPPGYMPNSE
ECPVYLEFDLVTYNSVHQMKHHLQDSFQQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVI
FVISAGETNPLDKEVLRNVALRAKCQGYTIFVFSFGPIHNDKELEELASHPLDHHLVQLG
RAHKPDLNYIIKFVKPFVHLIRRAINKYPPADLRPKCVNITSPNPENVGSGNNAFHIPEV
YKIETGNSELFDEFGSQEQHSFLLGISPSNGYETATDLIQKLYMLFSTGELLVNNEEEAQ
SEEIPALAGGKQQDKKEGEDSR
NT seq
7809 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctgctaatcacattgatcttaatcctttggactgaaacattggcagatcat
agtccagaacccggccctgagtatgcagacgtggtgtttctggtggacagctcggatcac
ctgggaactaagtccttcccctttgtgaaaacgttcctcaacaagatgatcagcagtctg
cccatagaggcccacaagtaccgcgtggccctggcccagtacagtgaccagttccacaac
gagttccagctgagcaccttcaggaacaggaaccccatgctgaactacctcaagaagaac
ttcggcttcatgggcggctccctgcgcatcggccacgcgctgcgggaggcgcacaggacc
tacttctctgcgcaggccggcgggagggacaagaagcagtttcccccgattctggtggtg
ctggcttccgcggagtccgaggatgacgtggaagaggcctccaaagctctgcgggaagac
ggggtgagaatcgtgtccgtggggctgcaggatgcttctgaggagcagctgaaggccatg
gccacggctcagtttcatttcaacttccggtcggtcagggaccttggcgcattttcccaa
aacatgacgcagatcatcaaggaagccacccagtacagggatggagcagccgatattcaa
gtctccttcccagtggcctgtcagaaagattcattagctgacctcgtgttcctagtagat
gaatcagttggcaccaggcaaaatttaaggaacctgcagaatttcctgaggaacattacc
gcctccatggatgtgagttacaactgcacgcgccttggtcttatgagttacagtgataga
gccaagactatttcctttctaaattcaagcacaacccagtatgagtttcaggagcaaatc
caaaagctttctatccaggctgggaaatccaatgctggggctgccattgagaagatgagg
ctagaagccttctcagagtcaagtggcagcagaagggcacagggagtgcctcagatcgca
gtctttgtcactcacagaccatcgactgatgaagtgcgcgacgtggcaatacaacttcgg
ctacaggatgtgactgtgtttggcatgaatattcaaggagctaatgacgtccagttagaa
gaaatagtgtcttaccctccgaggcaaatggtttccaagcttgagtcctatgcagacttg
gaagcttacagtaaaaacttccagaaaaaactccagaatgaaatttggtcccaaatttct
actcgtgctgagggaatggaccttgacagaactggctgtatggatacgaaagaggctgat
atctatttcctcattgatggctcaaccagcatacagaagaaacactttgggcaaatcaag
caatttatgctggctgtgacaggaatgttcagcattggcccagacaaagtccaagttgga
gcagtgcagtattcccataagatgaaagtggagttttctatcaatgacggttctaataat
gtgaacttaagaaatgctattttgaacatcgagcaactcaaaggcaggacccatactggg
gaggccctggatttcgtgctgtcaataataaaagaggataagaagcatagggcacgccaa
gttccctgttacctcattgtgctgactgatgggaggtccgcagatgaagtcctagagcct
gcggagagagtaagggctgagcaagtcaccattcatgcagttggcattggggaggctaac
aaagcacaactccaacaaattgctgggggagaagaaagggttagctttgggcagaacttt
gatgctttaagaagcataaaaaatgaagttgttcacaggatctgcaaagaaaaaggatgt
gaagacatgaaggctgacatcatgtttctggtggacagttctagcagtataggacatgac
aattttgggaaaatgaaaaccttcatgaaaaacctattagccaagattcagattggtcca
gatagaactcagattggtgtcattcagttcagcgatcaaactcaagaagaattccaactt
aataaatactttacacaaaatgaaatttctgattcaatagacagaatgtctctcatcgac
aaaaacactttgactggaaatgcactgacttctatagatgaatacttcacccctgccaag
ggggcccgtgctatggccaaaaagtttcttatcctcatcacggatggagaagcacaagat
cctgtgagagaccctgctaaagctcttcgggacaaaggtgtagttatcttctccgtgggg
gtgtatggcgccaataggacgcagctggaggagatcagtggggatggcaacttggtcttc
caggttgagaaatttgatgatctgaagacaatagaaagcaaactcatttttcgtgtttgt
gctctccatgattgcaaaaatattaaagtgttggacattgtgtttgtactagaccattca
ggcagcataaatacagaagagcaagaaagcatgatgaatctaactatccacttagtgaag
aaagcagatgttggcagtgcccgagttcggattggagctctcaaatactcagagtatcct
gaggttcttttccaccttgggaaatactcaaatggatctgcagtcattgaacacctgagg
aggcgcagggacactggagggcgtacctttactgccaaggctcttgatcacacaaacata
atgttcacggaagaacatggcagccgcatccagcaaaatgtgaagcagatgctgatcatc
atcaccgatggcgagtctgatgaccgaaatcggctcaatgacacagcactgaaattgaga
aacaaaggcattgatatctacgcagtgggtgtaggaaaggccaaccaacttgaacttgag
gctatggcagggaataaaaacaatactttccatgtagataatttcaacaaactgaaagat
ctttaccagcctctgcaagaaagaatgtgtaccagtgcccgtgagccgtgtgacgttcaa
gaagctgatatggttttcttttttgatggctctgacatggtctcccactcagagtttgtt
accatgacaacttttgtgtcagacttaattgataattttaaccttcagaaccagagaata
aaaatcgggttggctcaatttgggagtggcttccagaaaattattgagttgaaaaactct
ctgacaataccgaagctgaagactcgaattcaaaccatcaccaagagcaatgggtttccg
cgaattgacctggcccttaaaaaagtgaaagtcatgttcgatccatcttctggtgggagg
agaaatgctggtgtccttcagactttggttgtcatcacatccagggatccctactacaat
gtggctgatgaagtgaaagtcctgagaaacctcggaatttgtgtcctggtttggggcata
ggagatgttcataaggagcaacttctgccaatgacaggcgattctagaaaaataatcacc
ctcaaagactttaatacattaatggatgtggatatgaaaaaaagaatggttcgtgaaatc
tgccagagctgtgggaccaccaattgctttatggacatagtggtcgggtttgacatttcc
actcacctgctggggcagccgttgttctatggccaccccctgctggaatcctacctccca
agcatcttagaggacatcacctccatcgggagggtcagctgtggggcaggcacagaagtg
ctggtgaacgtggccttcaaggtgaacaatgaccctgccaagttccaactctaccagaga
gcaatatttgacagcctgcagcaagtcaatgtcgatgggccaacacatctgaatgcacag
ttcctgcagtcgctgtgggagacctttaatgatagacctaaatcccatggacaggttcta
ctcatcttttcagatggtcttgggggtgaaagcgagataatgcttgaagatcaatcagac
aggctcagagcagcaggacttgatgctctgctggtggtgtccctaaatacgactgcccac
gatgagttttccagctttgaatttggaaagggatttgattacaggactcatctaaccatt
ggcatgagagagctgggcaagatgctgtcacagtacctgggaaacgttgcagagaagact
tgctgctgcacattttgcaagtgtttgggagatccaggtcctcgtggatcccaaggactg
caagcctcgaagggttttccaggtctgaaaggcagcagaggacacaggggagacgacgga
gatcccggaagacgaggagactttggacccccaggagataaagggattgcaggatgtcca
ggggagcatggtcaaaagggaaccaaaggattttctggaagtaagggagaacaaggagag
gatggggttgacggactggatggagaagagggctttcgtggatttcctggggaaaaggga
gaaaaaggtgatccaggatctcagggcagcccaggttccagaggtccccctgggggatat
ggggaaaagggcttccaaggagatcctggtaatccaggacaaaacagtaacatcaaggga
caaaagggctccaaaggagaacaaggaagacaaggtacacctggacagaaaggaacacca
ggcagtcctaattccagaggaaataggggaagggaaggcgtaagggggcctccaggtgcc
tcgggggaaccgggaaatcgtggacctcaaggtgttccgggaaccaacggattacaaggc
ccacaggggttagatggaattcctggcagaaaaggagagaagggaagcgaggggcataaa
ggaccgcagggctcttctgggccagtgggagctaaagggaacatcggaagtcctgggcct
tcagggaaaaaaggagaacctggaattcttggagatccaggaccaatggggcaagtcgga
cagagaggaagacagggggattacggcatcccaggctatggtcaaatgggacgaaaagga
gtaaagggcccaagaggactccctggagatatgggtcaaaagggtgctgtcggtgaccct
ggaattcctgggggccctggacccaaaggatttaggggattaacactcactgtaggcctg
aaaggtgaacagggacctccaggacccctgggccctcctggacggagaggcatgaaaggc
atggcagggaagcctgtatattcccaatgtgatctgatccagttcttgagggaccatagt
ccttgctggaaagaagagtgtccagtgtacccaacagagctggtatttgccctggaccag
tcctacgacatctccgaacagagatttgacgaaatgagggaagtcatcacatccattatc
aatgaccttaacatcagggaaagtaactgccccgtgggagccagagttgttgtagtttcc
tatgactcaggcaccagctacctcatccgtgggtcagactaccgtaacaagaagcagctc
ctccagcttatttcccagttgaaatatcaaacccccacagaagcccaagacattggtaat
gcaatgaggtttgtggcccggaacgttttcaagcggacacatgcaggagccaatgtgagg
aaggtcgctgtgtttttcagcaacgggcaagcggccagtcggtcgtccatcatcacggcc
accatggagttcagtgccctagatatcagcccagcggtctttgcttttaatgaaaggact
ttccttgaggcttttgagtttgacgacactggaacatttcaggtgatcccagtttctcca
aatgagtcactagaaaaatttcgacattgtacactttgctacgataaatgttttccaatt
gcttgcatcaaagagatttttttacctgaaaattcatacatggatgtagccttcctctta
gacaatccttcgactatagcaaataatgagtttaatgctgtgaaaaccttggtgagctcc
atgattgacaacttcaacattgcctcagaccctagaatctcagactttggtgataggatt
gccctattgagctattctccttgggataattctaggagaaagaaggctgtggtaaaaaca
gagtttggatttacaacttataacagtggagtcctaatgaagagacacatccagtcttcc
ctccagcagcttaaaggagaagctaccattggccataccctactgtgggctgtggagaac
ctcttcccacaaacaccaaacttaagaaaacacaaggtcatttttgttatctcagctgga
gaatatcatgagagaaaggaattcttaaagaaggtggctctgagggccaagtgccaaggc
tatgtcatatttgtgatttccctgggctctgcatacaaggaggacatggaggagttagcc
agctacccacttgatcaccatctgatacatcttgagagaattcataaaccagatctggat
tatattacgaagtttctaaagccatttgtttattcagtcagacgaggattcaatgagtac
cccccaccagagcttgagaatgcttgcagactcatcacagaagaagcttatcaaaatagt
gatctcctatttactcctgagccacatgatatttcctcaggagagaacagcttcattggc
caggaattaagtgctggaaaagactcttcctttgtgttggaggacattggaagtgactct
ttggtttacatacctagtcatatgcttatgccacaagaattaaagatcacacagaagaaa
ggtcacaattctgaagaaattgcaagtttaacttctggacatgaaaaccatggcagaaaa
gaagaaccaggtcttactaatgaacctggagatacctctcttcaagaatattacatggat
gtggctttcctcatagatgcttcccaaagaataggaaatgatgagtttcaggaagtgaaa
gcttttctaatctcagtgcttgattattttcgtgttgcctcctacccactgacttccatg
ttaggagacagagtggcagttgtgagctattctcctccaggctatatgcccaacagtgaa
gaatgccctgtctacctggaatttgatttggttacttacaacagtgtacaccaaatgaaa
catcatctccaagactcttttcaacaactcaatggagatgtttttattggccatgccctg
cagtggacaattgacaatgtatttgtaggaacgcccaacctgaggaaaaacaaagttatc
tttgttatatctgctggcgaaaccaaccccttagacaaggaagtcttaagaaatgtagct
ctgagagccaagtgtcagggctacaccatatttgtattttcctttggtcctatacacaac
gacaaagaattagaagaattagccagccacccactggatcatcacttagtccagcttggc
cgagcccacaagccagatttgaactatatcatcaagtttgtcaagccatttgttcattta
atcagacgtgccatcaacaaatatccccctgcagatctgagacccaagtgtgttaacatc
acctctcccaacccagagaacgttggctcaggaaacaatgcattccatattcctgaggtg
tataaaatagaaacaggaaacagtgagctgtttgatgaatttggttcccaggagcagcat
tcctttttattagggatcagtcctagtaatggttatgagactgctactgatttgatccag
aagttatacatgctcttttcaactggagaactgctggtgaacaatgaggaagaggcacaa
tcagaagaaataccagctctagcaggtggtaaacaacaagataaaaaagaaggtgaggac
tcaagatga
DBGET
integrated database retrieval system
