Lutra lutra (Eurasian river otter): 125104653
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Entry
125104653 CDS
T08100
Name
(RefSeq) LOW QUALITY PROTEIN: polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125104653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125104653
Enzymes [BR:
llv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
125104653
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125104653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
MMR_HSR1
TniB
nSTAND3
AAA_16
AAA_10
ATP_bind_1
AAA_22
Motif
Other DBs
NCBI-GeneID:
125104653
NCBI-ProteinID:
XP_047593305
LinkDB
All DBs
Position
1:178720302..178722032
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AA seq
380 aa
AA seq
DB search
MSVNRTLGQKFTFDAGAKVAVFNWHGCSLQLSGRTEVAYISKDMPMLLYLNTHTALEQMR
RQAEKKEERGPRVMVVGPTDVGKSTVYRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMG
ALYIERPADVEEGFSIQAPLVYHFGSTTPGTNIKLYKITSQLGXVFNQRCEVNRRASVSG
CVINTCGWVKGSGYQALVHAASVFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGCV
VERSKDFRRECRDERIREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLRMSQ
EDNQLKLVPVTTGRDMVHHLLSVSTAEGTEENLSKTSVAGFIVVTSVDLEHQVFTVLSPA
LRPLPKNFLLIMDIRFMDLK
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaccgcacactgggccagaaattcacctttgatgctggtgccaaggtggct
gttttcaattggcatggctgttctttacagttgagtggccgcaccgaggtggcttacatc
tccaaggacatgcctatgttgctttatctcaacactcacacagctttggagcagatgagg
aggcaggcggagaagaaagaagagcgaggcccccgggtgatggtagtgggccccactgat
gtgggcaagtccacagtgtatcgtctactgctcaactacgcagtgcgtttgggccgccgt
cccacttatgtggagctggatgtgggccagggctccgtttccatccctggtaccatgggg
gccctctacattgagcggccagcagatgttgaagagggattctctatccaagcccctctg
gtgtatcattttggctccaccactcctggtaccaacatcaagctttataagattacatct
cagttagggnccgtgttcaatcaaaggtgtgaagtgaaccgaagggcctctgtgagtggc
tgtgtcattaacacctgtggctgggtcaagggctctgggtaccaagccttggtgcacgca
gcttcagtctttgaggtcgatgtggtagtggttctggatcaagaacgactgtacaatgaa
ctaaaacgggacctgcctcactttgtccgcactgtgctgctccctaaatcggggtgtgtg
gttgaacgctccaaagacttccggcgggaatgcagggatgagcgtatccgtgagtatttc
tatggattccggggctgtttctatccccatgccttcaatgtcaaattttcagatgtgaaa
atctacaaagttggggcacccaccattccagactcctgtttgcctttacgcatgtctcag
gaggacaatcagctcaagctagtacctgtcacaactggccgagatatggtgcaccacctc
ctgagtgttagcactgctgagggcacagaggagaacctttccaagaccagtgtggctggc
ttcatcgtggtgaccagtgtggacctggaacatcaggtgtttactgttctctctccagcc
cttcgaccactgcccaagaacttccttctcatcatggatatccggttcatggatcttaag
tag
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