Lutra lutra (Eurasian river otter): 125104938
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Entry
125104938 CDS
T08100
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04140
Autophagy - animal
llv04148
Efferocytosis
llv05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125104938
04148 Efferocytosis
125104938
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125104938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
llv04131
]
125104938
Membrane trafficking [BR:
llv04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125104938
Hops complex
125104938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_5
zf-C3HC4_2
zf-RING_16
KNOX2
zf-ANAPC11
zf-RING_Vps41
zf-RING_2
zf-RING_UBOX
zf_RING_Vps8
zf-rbx1
WD40_Prp19
Motif
Other DBs
NCBI-GeneID:
125104938
NCBI-ProteinID:
XP_047593831
LinkDB
All DBs
Position
7:60560635..60573668
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AA seq
973 aa
AA seq
DB search
MASILDEYEDSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSL
VVSCNQLCMSLGKDTLLRIDLGKANEPNHVELGRKDDAKVHKMFLDHTGSHLLIALSSTE
VLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLNEEGGPAPVCALEAERGPDGRGFVIATTRQRLFQFIGRAAEGAE
VQGFSGLFAAYADHPPPFREFPSSLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGALDCG
RPDSLLSEERVWEYPEGVGPGASPPMAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
DKFGPLRHMVKDSSTGHLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREAEFCFRQRRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLAGL
KPAERTQATLLTAWLTELYLSRLGALQGDPEALSLYRETRERFRSFLSSPRHKEWLFASR
ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
ILIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGEAQQVSQATRYMEFCVNVLGETE
QAIHNYLLSLYARSQPASLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEDDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNNHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQR
KLGAAPAPAKGSTRTKEAEAGAATAGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQRYEEEHLSWL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccatcctggatgaatacgaggactccctgtcccgctcagccgtcttgcagcct
ggctgccccagcgtgggcatcccccactccgggtatgtgaatgcccagctagagaaggaa
gtgcccattttcacgaagcagcgcattgactttaccccttctgagcgaattaccagtctt
gttgtctcctgcaatcagctctgcatgagcctgggcaaggatacactactccgcattgac
ctgggcaaggccaatgaacccaaccatgtggagctggggcgcaaggatgatgccaaggtt
cacaagatgtttctggaccacactggctctcacctgctgattgctctgagcagcactgag
gtcctctatgtgaaccgtaatgggcagaaggtacgaccactggcacgctggaaggggcag
ctggtggagagtgtgggctggaacaaggcactgggcaccgagagcagcacgggtcccatc
ctggtcggcaccgcccaaggccagatcttcgaagcggagctctcagccagtgagggtggg
cttttcggccctgcgccagacctctacttccgcccgttgtacgtactcaacgaagaaggg
ggtccagcccctgtgtgtgccctcgaggccgagcgaggccctgatgggcgtggctttgtc
attgccaccacccggcagcgcctcttccagttcatagggcgagcagcggagggagccgag
gttcagggcttctctgggctctttgctgcctacgcggaccacccacccccattccgtgag
ttccccagcagtctgggctacagtgagttggccttctataccccaaagttgcgctccgcg
ccacgggccttcgcctggatgatgggggatggcgtgttgtacggagccctggactgcggg
cgccccgattccctgctgagcgaggagcgagtctgggagtacccagagggggttggtccg
ggagccagcccgcccatggctatcgtcctgacccagttccacttcctgctgctgctggcg
gaccgcgtggaggcggtgtgcacgctgacggggcaggtggtgctgcgggatcacttcctg
gacaagtttgggcccctgaggcacatggtgaaggactcctccacgggccacctgtgggcc
tacaccgaacgggccgtcttccgctaccacgttcagcgggaggcccgggacgtctggcgc
acctacctggacatgaaccgcttcgacttggccaaagagtactgtcgagagcggcctgac
tgcctggacactgtcctggcccgagaggccgagttctgctttcgccagcgtcgttacctg
gagagcgcccgctgctatgccctgacccagagctactttgaggagattgccctgaagttc
ctggaggcccgtcaggaggaggccctggctgagttcctgcagcgaaaactggccggtctg
aagccagcagagcgcacccaggccacgctgcttaccgcctggctcaccgagctttacctg
agccggcttggggcgctgcagggtgatcctgaggccctgagcttataccgggagacccgg
gagcgcttccggtccttcctcagcagcccccgccacaaggagtggctcttcgccagccgg
gcttccatccacgagctgctggccagccacggggacacggagcacatggtgtacttcgct
gtgatcatgcaggactatgagcgcgtggtggcataccattgccagcacgaggcctacgag
gaggccctggctgtgctcgctcgccaccgtgacccccagctcttctacaagttctcgccc
atcctcatccgtcacatccctcgccagttggtggacgcttggatcgagatgggcagccgg
ctggatgcccggcagctcatccctgcactggtgaactacagccagggtggcgaggcccag
caggtgagccaggccacccgatacatggagttctgcgtcaatgtgctcggcgagacggag
caggcgattcacaattacctgctgtcgctgtatgcccgcagccagccggcctcgctgctg
gcgtacctggagcaggcaggcgccagcccacaccgcgtacattacgacctcaagtacgcg
ctgcggctctgtgcagagcacggccaccaccgtgcctgcgttcacgtctacaaggtcctg
gagctgtacgaggaggctgtggacctggccctgcaggtggacgtggacctggccaagcag
tgtgccgacttgccagaggacgacgaggagctgcgtaagaagctgtggctgaagatcgct
cggcacgtggtgcaggaggaggaggacgtgcagacggccatggcctgcctggccagctgc
cccctgctcaagatcgaggacgtgctgcctttctttccggactttgtcaccatcgaccac
ttcaaggaggccatctgcagctctctcaaggcctacaacaaccacatccaggagctgcag
cgggagatggaagaggccacggccagcgcccagcgtatccggcgagacctgcaggagctg
cggggccgctatggcaccgtggagccccaggacaagtgcgccacctgtgacttccctctg
ctcaaccgccctttttaccttttcctctgcggccacatgttccatgctgactgcttgctg
caggctgtgcggcctggcctgccggcctacaagcaggcccggctcgaggagttgcagcgg
aagttgggagccgctccagcccctgccaagggctccacccgcaccaaggaagccgaggca
ggggctgccacggcggggcctagtcgggaacagctcaaggctgaccttgatgaactggtg
gccgccgagtgcgtgtactgtggggagctgatgatccgctccattgaccggcccttcatt
gacccccagcgctatgaggaggagcacctcagctggctgtag
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