Lutra lutra (Eurasian river otter): 125104950
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Entry
125104950 CDS
T08100
Name
(RefSeq) nuclear receptor ROR-alpha isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04659
Th17 cell differentiation
llv04710
Circadian rhythm
llv05017
Spinocerebellar ataxia
llv05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
125104950
09159 Environmental adaptation
04710 Circadian rhythm
125104950
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
125104950
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
125104950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
llv03000
]
125104950
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
llv03310
]
125104950
Transcription factors [BR:
llv03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
125104950
Nuclear receptors [BR:
llv03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
125104950
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
125104950
NCBI-ProteinID:
XP_047593846
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Position
7:complement(41509056..42222448)
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AA seq
523 aa
AA seq
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MESAPAAPDPAASEPGSSGADAAAGARETPLNQESARKSEPPAPVRRQSYSSSSRGISVT
KKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRT
SRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAE
PLTPTYNISANGLTELHEDLSNYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIK
PEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREELQQITW
QTFLQEEIESYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGS
LEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI
ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRAL
CGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggagtcagctccggcagcccccgaccccgccgccagcgagccgggcagcagcggcgcg
gacgcggccgccggcgccagggagaccccgctgaaccaggaatccgcccgcaagagcgag
ccgcccgccccagtgcgcagacagagctattccagcagcagcagaggtatctcagtaacg
aagaagacacatacatctcaaattgaaattattccttgcaagatctgtggagacaaatca
tcaggaatccattatggtgtcattacatgtgaaggctgcaagggctttttcaggagaagt
cagcagagcaatgccacctactcctgtccgcgtcagaagaactgtttgattgatcgaacc
agtagaaaccgttgccagcactgtcggttacagaaatgcctggccgtaggcatgtctcga
gatgctgtaaaatttggccggatgtcaaaaaagcaaagagacagcttgtacgcagaagta
caaaaacaccggatgcagcagcagcagcgagaccaccaacagcagcctggagaggccgag
ccgctgactcccacctacaacatctcggccaacgggctcaccgagcttcacgaggacctc
agcaactacatcgacgggcacaccccagagggaagcaaggcagactctgctgtcagcagc
ttctacctggacatacagccttccccagaccagtcaggtcttgatatcaatggaatcaaa
ccagaaccaatatgtgactacacaccagcatcaggcttctttccctactgttctttcacc
aacggagagacgtccccaactgtgtccatggcagaattagaacaccttgcacagaatata
tctaaatcacatctggaaacttgccaatacttgagagaagagctccagcagataacgtgg
cagacctttctgcaggaggagatcgagagctaccaaaacaagcagcgagaggtgatgtgg
cagttgtgtgccatcaaaatcacggaagctatacagtatgtggtcgagtttgccaaacgc
attgacggatttatggaactgtgtcaaaatgatcaaattgtgcttctcaaagcaggttct
ctagaggtggtatttatcagaatgtgccgtgccttcgactctcagaacaacaccgtgtac
tttgatgggaaatatgctagccccgatgtcttcaaatccttgggttgtgaagactttatt
agctttgtatttgaatttggaaagagtttatgttctatgcacctgactgaagatgaaatt
gcgttattttctgcatttgtactaatgtcagcagatcgctcgtggctgcaggaaaaggta
aaaattgaaaaactgcaacagaaaattcagctagctcttcaacacgtcctgcagaagaat
caccgagaagatggaatactaacaaagttaatatgcaaggtgtctacattaagagcctta
tgtggacgacatacagaaaagctaatggcatttaaagcaatatacccagacattgtacga
cttcattttcctccattatacaaggagttgttcacttcagaatttgagccagcaatgcaa
attgatgggtaa
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