Lutra lutra (Eurasian river otter): 125106128
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Entry
125106128 CDS
T08100
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03082
ATP-dependent chromatin remodeling
llv04714
Thermogenesis
llv05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125106128
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
125106128
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
125106128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llv03021
]
125106128
03036 Chromosome and associated proteins [BR:
llv03036
]
125106128
Transcription machinery [BR:
llv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125106128
Chromosome and associated proteins [BR:
llv03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125106128
PBAF complex
125106128
GBAF(ncBAF) complex
125106128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
125106128
NCBI-ProteinID:
XP_047595697
LinkDB
All DBs
Position
8:51481800..51502435
Genome browser
AA seq
1244 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQTSASQQMLNFPDKGKEKT
TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
RIEESGTDEARAEGQATEEKKEPKEPREGVGAAEEETKEKTSEVPKKDEERGKQGDSEKE
SEKSDGDPIVDAEKEKEQKEGQEEVLKDVVESEGERKTKVERDIGEGNLSTAAAAALAAA
AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPALPPGSQPVPPAGTGPPVVHSLAMAP
ASVAPAPAGGGAPPGSLGPSEQIGQAGSAAGPQQQQPAGAPQPGAVPPGVPPPGPHGPSP
FPNQQTPPAMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPPPAPSVIPFGSLADSISINL
PPPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQS
PAIVAAVQGNLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgaggctctggctcggcaagaactacaagaagtatatccaa
gctgaaccacctaccaacaagtccttgtctagcctggttgtacagttgctacagtttcag
gaagaagtttttggcaaacatgtcagcaatgcaccgctcacgaaactgccgatcaaatgt
ttcctagatttcaaagcaggaggctccctatgccacatacttgcagctgcctacaaattc
aagagtgaccagggatggcggcgttacgatttccagaatccatcacgcatggaccgcaac
gtggaaatgttcatgaccattgagaagtccttggtgcagaataactgcctgtctcgacct
aacatatttttgtgcccagaaattgaacccaaactgctggggaaattaaaggacattatc
aagagacatcagggaacagtcactgaagataagaacaatgcctcccatgttgtgtatcct
gtcccagggaacctggaagaagaggaatgggtacgaccagtcatgaagcgggataagcag
gttcttctgcactggggctactatcctgacagttacgacacgtggatcccagccagtgaa
atcgaagcatctgtggaagatgctccaactcctgagaaacctaggaaggttcatgcaaag
tggattctggacacagacactttcaatgaatggatgaacgaggaagactacgaggtaaat
gatgacaaaaaccccgtctcccgccgaaagaagatttcagctaagacgctgacagatgag
gtgaacagcccagattcagatcggcgggacaagaaaggagggaactataagaaaaggaag
cgttccccctctccttcaccaaccccagaagctaagaagaaaaatgctaagaaaggtccc
tcaacaccttacaccaagtcgaagcgtggccacagagaggaggaacaagaagacctgaca
aaggacatggatgagccttcaccagtccccaacgtagaggaggtgacgttgcctaaaaca
gtcaacactaagaaggactcagagtccgccccagtcaaaggaggcaccatgactgacctg
gatgagcaggaggatgaaagcatggagaccacgggcaaggatgaggatgaaaacagtaca
gggaataagggggagcagacgaagaatccggacctccatgaggacaacgtgaccgagcag
acgcaccacatcatcattcccagctacgccgcctggtttgactataacagtgttcatgcc
attgagcggagggctctccctgagttctttaacggcaagaacaagtccaagactccagaa
atctacctggcttatcgaaacttcatgattgacacataccggctgaacccccaggaatat
cttacctccaccgcctgccgcaggaacctggccggggatgtctgtgccatcatgagggtc
catgccttcctagagcagtggggtcttattaactaccaggtggatgctgagagtcgacca
accccgatggggcctccgcccacctctcacttccacgtcctggcagacacgccctctggg
ctggtgcctttgcagccgaagaccccgcagggccgccaggttgatgctgataccaaggct
gggcgaaagggcaaagagctggatgacctggtgccagagacggctaagggcaagccagag
ctgcagacctctgcttcccagcaaatgctcaacttccctgacaagggcaaagagaaaacg
acagacatgcagaactttggcctgcgcacagacatgtacacgaagaagaatgtcccctcc
aagagtaaagctgcggccagtgccactcgagagtggacggaacaggagaccctgctcctc
ctggaggcactggaaatgtacaaagatgactggaacaaagtgtcagagcacgtgggaagc
cgcacgcaggatgagtgcatcttgcattttcttcgtcttcccattgaagacccgtacctg
gaggactcagaggcctccctgggccccctggcctaccagcctatccccttcagtcagtca
ggcaaccctgttatgagcactgttgccttcctggcctctgtcgtcgatcctcgagtcgcc
tctgctgctgcgaagtcggccctagaagagttctccaaaatgaaggaagaagtgcccaca
gccttggtggaggcccacgttcggaaagtggaagaggcagccaaagtgacaggcaaggcc
gacccagccttcggtctggagagcagtggtatcgcgggaactacctctgacgagcctgag
cggatcgaggagagcgggacggacgaggcgcgggcggagggccaggccacggaggagaag
aaggagcccaaggaaccccgagaaggagttggggctgccgaagaagaaacaaaggagaaa
accagcgaggtccccaagaaggacgaagagagagggaaacaaggtgacagcgagaaggaa
tcagagaagagcgatggggaccccatagttgatgcggagaaggagaaggagcagaaggaa
gggcaggaggaagtgctgaaggatgtggtagagtcagagggggagaggaagacgaaggtg
gagcgggacatcggggagggcaatctgtccaccgctgccgccgctgctctggccgctgct
gcagtgaaggccaagcacctggctgccgtggaggagaggaagatcaaatcgctggtggcc
ctgctggtggagacccagatgaaaaagttggagatcaaactccggcactttgaagagtta
gagaccatcatggaccgggagcgggaggcactggagtatcagaggcagcagctcctggcc
gacagacaagctttccatatggagcagctgaagtatgcagagatgagggcccggcagcag
cacttccagcaaatgcaccaacagcagcagcagcccccgccagccctgcccccgggctcc
cagccggtcccacctgcaggcactgggccacctgtggttcacagcttggctatggctcca
gcctctgtcgcccctgctcctgctggcggtggggctccccccggaagcttgggcccctct
gaacagattgggcaggcagggtcagccgcggggccacagcagcagcaaccagctggagcc
ccccagcctggggcagtcccaccaggggtacccccccctggaccccatggcccctcaccg
ttccccaaccaacaaactcctcccgcaatgatgccaggggcagtgccaggcagcgggcac
ccaggcgtggcgggtaatgctcctttgggtttgcctttcggcatgccgcctcctcctcct
cctcccgctccatccgtcatcccatttggtagtctagccgactccatcagtattaacctg
ccccctcctcctaacctgcatgggcatcaccaccatctcccgtttgccccgggcactctc
cccccacctaacctgcctgtgtccatggcgaaccctctacaccctaacctgccggcgacc
accaccatgccatcttccttgcctctcgggccggggctcggatccgccgcagcccagagc
cctgccattgtggcagctgttcagggcaacctcctgcccagtgccagcccactgccagac
ccaggtacccccctgcctccagatcccacggccccgagcccaggcacagtcacccctgtg
ccacctccgcagtga
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integrated database retrieval system
