Lutra lutra (Eurasian river otter): 125106746
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Entry
125106746 CDS
T08100
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125106746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125106746
Enzymes [BR:
llv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125106746
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125106746
mRNA degradation factors
3'-5' decay
Pan complex
125106746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
WD40_CDC20-Fz
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
125106746
NCBI-ProteinID:
XP_047597195
LinkDB
All DBs
Position
8:51343088..51357296
Genome browser
AA seq
1198 aa
AA seq
DB search
MNFEGLDPGLAEYAPAMHSALDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIR
QIQSLENGILFLTKNNLKYMARGGLIIFDYVLDESEDMHSLLLTDSSTLLVGGLQNHILE
IDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLS
DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS
PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDSFSQVTESPIGREE
EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP
VRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADS
DEASGKGNLARLIQRWNRFILTQLHQDMQELEVPQAYRGAGGSSFCSSGDSVIGQLFSCE
MENCSLCRCGSETVRASSTLLFTLSYPEDKTGKNCDFAQVLKRSICLEQNTQAWCDNCEK
YQPTIQTRNIRHLPDILVINCEVNSLKEADFWRMQAEVAFKMAIKKHGGEISKNKEFALA
DWKELGSPEGMLMCSSIEELKNVWLPFSIRMKITKNKGLDVCNWTDGDEIQWGPARAEEE
HGVSVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPIDKH
EAVQFDMNWKVPAILYYVKRNLNSKYNLNIKNPIEASVLLAEASLARKQRKTHTTFIPLM
LNEMPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGIPF
IDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGL
QKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDARTAL
QLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQTSPKNAAVFSSVLAL
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgagggtctggaccctggactggcagagtatgccccagccatgcattctgcc
ctggaccctgtcctggatgcccatctgaacccaagtctgctacagaatgtggagctggat
ccggagggggtggccttggaggctcttcccgtccaggagtcagtgcacataatggaaggt
gtctactctgaattgcacagtgtggtggctgaagtgggtgtgcctgtctccgtctcccac
tttgacttgcacgaggagatgctatgggtgggaagccacgggggccatgctacttcattt
ttcggcccggccttggaacgttactcatcctttcaggtcaatggcagtgatgacattcga
cagatccagagcctagaaaatggtatcctttttctcaccaagaacaacctcaagtatatg
gcccgtgggggcctcattatatttgattacgtgctagatgagagtgaggatatgcacagt
cttctgctgactgacagcagcactctgcttgtcggtgggctgcagaaccacatactggag
attgaccttaacactgtccaggagactcagaagtatgcggttgagacgcctggagtcact
attatgagacagacaaatcgtttcttcttctgtggccacacgtctggcaaggtttccctg
cgagaccttcgtacttttaaggtggagcatgagttcgatgctttctcagggagtctgtca
gattttgatgtgcatggcaacctgctggccgcctgcggcttctctagccgcctcaccggc
ctggcctgtgaccgtttcctcaaggtgtatgatctgcgcatgatgcgcgccatcacaccc
cttcaagtacatgtggatcctgccttcttgcgcttcatccccacctatacttctcgactt
gctatcatctcccagtcagggcagtgccagttttgtgagcccacaggccttgccaaccca
gcagacatctttcatgtgaatcctgtggggcctctgctaatgacgtttgacgtatcagcc
agcaagcaggccctggcctttggggattctgagggctgtgtgcacctctggactgattcc
cctgagccttccttcaacccttactcccgtgagaccgagtttgctttgccctgtctcgtg
gactcactgcctcctctggactggagccaagacctgctgcctctttccctcatccctgtt
ccgctcaccactgacacacttctctctgactggcctgctgccaactccgctccagctccc
aggcgagcgccccctgtggatgcagagattctccgcaccatgaagaaggtgggcttcatt
ggctatgcacccaacccccgcacccggttgcgcaatcagattccttaccgactcaaggag
tcagacagtgaatttgacagcttcagccaggtcactgagtcaccgatagggcgggaagag
gagccacatctccacatggtctctaaaaaataccgcaaggtaaccatcaaatactccaag
ctagggctggaggactttgacttcaaacactacaataagaccctgtttgctggcttggag
ccccacatccccaatgcctactgtaactgcatgatccaggtgctctacttcctggaacct
gttcgctgtctaatccagaaccatctttgccagaaggagttctgtctggcatgtgagctg
ggcttccttttccacatgttggacctctctcggggtgacccttgtcagggcagtaatttt
cttcgggcattccgcaccatccctgaggcgtcagcccttggtctgatcctggcggactca
gatgaggcttcaggcaaaggcaatctggccaggcttattcagaggtggaatcgctttatt
ctcactcaactgcatcaggacatgcaggagctcgaagtacctcaggcttatagaggtgct
ggaggcagcagcttttgctcatcgggggactcggtcatcgggcagttgttcagctgtgag
atggagaactgtagcctgtgccgctgtggcagtgagaccgtgcgggcctcgtccaccctg
ctcttcacactctcctaccccgaagataaaaccgggaagaactgtgactttgctcaggtg
ctgaagcgaagcatctgcctagagcagaatacacaggcctggtgtgacaactgtgaaaag
taccagcccacgattcagacccgcaacatccgccatctgccagatattctcgtcatcaac
tgtgaggtgaacagtctgaaagaagctgatttctggagaatgcaggccgaggttgccttc
aagatggcaataaagaagcatggtggggaaatctccaagaacaaggagtttgctttggct
gattggaaagaactggggagtccagagggcatgctgatgtgttcctccattgaggagttg
aagaatgtctggcttcctttctccattcgcatgaagataaccaagaacaaagggctggac
gtttgcaattggactgatggggatgagatacagtggggcccagccagggcagaggaggag
catggtgtctctgtgtatgacctgatggctactgtggtacacatcctggactcacgcaca
gggggcagcctggtggctcacatcaaagtcggagagacctaccaccagcgtaaggagggt
gttacccaccagcagtggtatctcttcaatgactttcttattgaacctattgataagcat
gaagctgtgcagtttgacatgaattggaaagtgcctgctatcctttattacgtcaaaagg
aatcttaattccaaatacaacttgaacatcaagaaccctattgaggcaagtgtcctgctg
gctgaagcctcactagcacggaagcagcggaaaacacatactacctttattccactgatg
ctgaatgagatgccacaggttggggacttggtgggcctggatgctgagtttgtcactctt
aatgaggaggaagcagagttacgcagtgatggcactaagtctaccatcaaaccaagccag
atgtcagtagcaaggatcacctgtgttcggggccagggacccaatgagggtattcccttc
attgatgactacatctctactcaggagcaggtggtggattacttgactcagtattcgggg
ataaagccaggagacctagatgccaagatttcctctaagcacctcacaactctcaagtct
acctacttaaagcttcgttttcttatagacattggagtcaagtttgtgggtcatggtttg
cagaaggacttccgggtcatcaacctcatggtgcccaaggaccaagtccttgacactgtc
tatctgtttcacatgccccgaaaacgaatgatatccctgcgattccttgcttggtacttt
ctggacttgaagattcaaggggaaacccatgacagtattgaggatgcccgaacagccctt
cagctctaccgaaaatatctggagctaagcaaaaatggcactgagcctgagtccttccac
aaagtgctcaagggtctttatgagaagggccgaaagatggactggaaggtgcctgaacct
gagggccagacaagtcccaagaatgcagctgtcttctcctcagtgttggcactctga
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integrated database retrieval system
