Lutra lutra (Eurasian river otter): 125107675
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Entry
125107675 CDS
T08100
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04151
PI3K-Akt signaling pathway
llv04510
Focal adhesion
llv04512
ECM-receptor interaction
llv04518
Integrin signaling
llv04974
Protein digestion and absorption
llv05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125107675
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125107675
04518 Integrin signaling
125107675
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125107675
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125107675
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
125107675
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
llv00536
]
125107675
Glycosaminoglycan binding proteins [BR:
llv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125107675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
125107675
NCBI-ProteinID:
XP_047598942
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All DBs
Position
8:60323142..60354213
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AA seq
1416 aa
AA seq
DB search
MIRFGAPQTLVLLTLLVAAVLRCQGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAG
EQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDE
KAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPG
KPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG
ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAVNQGNNRQPGPPFGPVGPAGGPGFPGAP
GAKGEAGPTGARGPEGAQGPXGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAP
GFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKR
GARGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP
GEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGAN
GEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP
GPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPK
GASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPI
GPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQ
GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSN
GNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPGDDGPSGPDGPP
GPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA
GEPGREGSPGADGPPGRDGAAGVKGDRGEAGAVGAPGAPGPPGSPGPAGPTGKQGDRGEA
GAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPGPSGDQ
GASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGTPGPPGPP
GPPGPGIDMSAFAGLGQREKGPDPLQYMRADQPAGDLRQHDAEVDATLKSLNNQIESLRS
PEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPANV
PKKNWWSSKGKDKKHIWFGETINGGFHFSYGDDNLPPNTANVQMTFLRLLSTEGSQNITY
HCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTKHTGKWGKTLIE
YRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcttcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcgatgtcagggccaggatgtccggcaaccaggaccaaagggacagaaaggagagcct
ggagacatcaaggatattgtaggacccaaaggacctcctgggcctcagggacctgcaggt
gaacaaggacccagaggtgatcgtggcgacaaaggtgaaaaaggtgcccctggacctcgt
ggcagagatggagagcctgggacccctggaaatcctgggcccccaggtccccctggcccc
ccgggtccccccggccttggtggaaacttcgctgcccagatggctggaggattcgacgag
aaggctggtggcgcccagatgggagtgatgcaggggccgatgggccccatgggacctcgg
ggacctccaggccctgctggtgctcctggacctcaaggatttcaaggcaaccctggtgaa
cctggggaacccggagtctccggtcccatgggtccccgtggtcctcctggcccccctgga
aaacctggtgatgatggcgaagctggaaagcctggaaaatctggcgaaagaggtccccct
ggccctcagggtgctcgcggcttcccgggaaccccaggccttcctggtgtcaagggtcac
agaggctacccaggtctagatggtgctaagggagaagctggggctccaggtgtgaaggga
gagagtggttcaccgggagagaatggctctccaggcccaatgggtccccgaggcctgcct
ggtgagcgaggacggactggccccgctggtgctgcagtgaatcagggaaataataggcag
cctggacccccatttggtcccgtgggtcctgctggtggtcctggcttccctggtgctccc
ggggccaagggtgaagctggccccacaggtgctcgcggtcctgaaggtgctcaaggtccc
ngaggtgaacctggtactcctgggtcccccgggccggctggtgcctccggtaaccctgga
acggatggaattcctggagccaaaggatctgctggtgctcctggcattgctggtgcccct
ggcttccctgggccccgtgggccacctggtcctcaaggtgcgactggtcctctgggcccg
aaaggtcagacgggcgagcctggtattgccggcttcaagggtgaacaaggccccaaggga
gaacctggccctgctggcccccaaggagcccctggtcctgctggtgaagaaggcaaacga
ggagcccgtggagagcctggtggtgctgggcccgtcggtccccctggagagagaggtgct
cctggtaaccgtggtttcccaggtcaggatggtctggcaggtccaaagggagcccctgga
gagcgagggcccagtggccttgctggtcccaaaggagccaatggtgaccctggccgtcct
ggagagcccggccttcctggagcccggggtctcactggtcgccctggtgatgctggtcct
caaggcaaagttggtccttctggagcccctggtgaagatggtcgccctggtcctccaggt
cctcagggcgctcgtgggcagcctggtgtcatgggtttccctggccccaaaggtgccaac
ggtgagcctggcaaggctggtgagaagggactgcccggcgctcctggtctgagaggtctt
cccggcaaagatggcgagacaggtgctgcaggaccccccggacccgccggacctgctggt
gaacgaggcgagcagggtgctcctgggccatctgggttccagggacttcctggccctcct
ggtcccccaggtgaaggtggaaaaccaggtgaccagggtgttcccggtgaagctggagcc
ccaggcctcgtgggtcccaggggcgaaagaggtttcccaggcgaacgtggctctcccggg
gcccagggcctccagggcccccgtggcctccccggcactcctggcacagatggtcccaaa
ggtgcatctggcccggctggcccccctggggctcagggccctccaggtctgcaagggatg
cccggtgagaggggagcagctggcatcgctgggcccaagggagacaggggtgacgttggt
gagaaaggccctgagggagcccccgggaaggacggtggacgaggcctgactggtcccatt
ggcccccctggccccgctggtgccaatggtgagaagggagaagttggccctcccggtcca
gcaggaaccgctggtgctcgcggtgccccgggtgaacgtggagagactggaccccccggg
cccgctggattcgcaggtcctcctggtgctgatggccagccaggggccaagggcgagcaa
ggagaggccggccagaaaggtgatgctggtgccccgggtcctcagggcccctctggagct
cctgggcctcagggtcctactggtgtgactggtcctaaaggagcccgaggtgctcaaggt
cccccgggagccaccggattccccggagctgctggccgcgtcggacccccaggctccaat
ggaaaccctgggccccctggtccccctggtccttctggaaaagatggtcccaaaggtgct
cgaggagacagtggcccccctggccgtgccggtgaccctggtctccaaggtcctgctgga
ccccctggcgagaagggagagcccggagatgacggtccctctggtcctgatggtcctcca
ggtccccaaggtctggctggtcagaggggtatcgttggtctacctgggcagcgtggtgag
agaggattcccaggcttgcctgggccatcgggtgagcctggcaagcagggagctcctggt
gcatctggtgaccgaggtccccctggccccgtgggtcctcctggcttgaccggtcctgcc
ggtgaacctggacgagagggaagccctggtgctgacggcccccctggcagagatggcgca
gctggagtcaagggtgatcgtggtgaggccggtgcagtgggtgcccctggagctcccggg
ccccctggctctcctggccctgctggcccaactggaaagcagggagaccggggagaagct
ggtgcacaaggccccatgggtcccgcaggaccagctggagcccgaggaatcccaggtcct
caaggtccccgaggtgacaaaggagaagctggagaggctggcgagaggggactgaaggga
caccgtggcttcaccggtctgcagggtctgcctggcccccccggtccttctggagaccaa
ggtgcttctggtcctgctggtccttctggtcctagaggtcctcctggccctgttggtccc
tctggcaaagatggtgctaatggaatccccggccccatcgggccccctggcccccgtgga
cggtcaggcgaaactggccccgctggtcctcctggaacccctgggccccctggtcctcca
ggtccccccggccccggcatcgacatgtctgcctttgctggcctcggccagagagagaag
ggccccgaccccctgcagtacatgcgggccgaccagccagctggtgacctgagacagcac
gacgctgaggtggacgccacgctcaagtccctcaacaaccagatcgagagcctgcgcagc
cccgagggctcacgcaagaaccctgctcgcacctgccgggacctgaaactctgtcaccct
gaatggaagagcggagactactggattgaccccaaccagggctgcaccttggacgccatg
aaggttttctgcaatatggagactggcgagacctgcgtctaccccaacccagcgaacgtt
cccaagaagaactggtggagcagcaagggcaaggacaagaaacacatctggtttggagaa
accatcaatggcggcttccatttcagctatggtgacgacaacctgcctcccaacactgcc
aacgtccagatgacgttcctacgcctgctgtccaccgagggctcccagaacatcacctac
cactgcaagaacagcatcgcctacctggatgaggcagccggcaacctcaagaaggccctg
ctcatccagggctccaatgacgtggagatccgggctgagggcaacagccgcttcacatac
actgtcctgaaggatggctgcacgaaacacaccggtaagtggggcaagactctgatcgag
taccggtcacagaagacctcacgtctccccatcattgacattgcgcccatggacatagga
gggcccgagcaggaatttggtgtggacatagggcctgtctgcttcttgtaa
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