Lutra lutra (Eurasian river otter): 125108278
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Entry
125108278 CDS
T08100
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125108278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llv03021
]
125108278
Enzymes [BR:
llv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125108278
Transcription machinery [BR:
llv03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
125108278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
RNA_pol_3_Rpc31
Motif
Other DBs
NCBI-GeneID:
125108278
NCBI-ProteinID:
XP_047599796
LinkDB
All DBs
Position
9:40282676..40360468
Genome browser
AA seq
1717 aa
AA seq
DB search
MLGSKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
VCQLRVLEVGALQAVYELERILNRFLEENADPTAFEIQEELEQYTAKIVQNNLLGSHGAH
VKNVCESRSKLIAYFWKAHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPAMVHKKAGQKDT
EPLGIEEAQIGKRGYLTPTSAQEHLTALWKNEGFFLNYLFSGLEDVDVESRFNPSMFFLD
FLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDMVLIRKLLALMAQEQELPCEVAAPAK
DEEKDSSIVLDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPNVHPGASMVINEDGSRTALSAVDLTQREAVAKQLLTPATGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELLYRG
LTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHVPLSLSGKAKISGKAWVQES
PRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTC
LARLFTAYLQLYRGFTLGVEDILVKPKADAKRHRVIEESTHCGPRAVRAALNLPEAASCD
EVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK
PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLQEVLSRADPQKALRHFRAIKKWQSKHP
NTLLRKGAFLSYSQKIQASVKALNLEGGNQNGRSLGTHQILKMWSELDEQSRRKYQKKAA
PCPDPSLAVWRPDIYFASVSETFEKKMDDYSVEWASQAEKSYEKSELSLDRLRTLLQLKW
QRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMSVPVFNTKKALKRVKSLKKQLTRVCLGEVLEKIDVQESFCVGDKQDKFQVYRLRFQ
FLPHAYYQQEKCLRPEDILHFVETRFFKILMESLRKKNNKASAFRSVNTRRATQRDLDNA
GESERSRGEQEGDEEEEGPIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEVEEDDDE
DVREEGHFSANGAHEAQEQDEEVGSGPEEDLPASTPLSRPRKSAHRREPQGAEAVERRVR
AVREAHSFIEDYEYDTEESLWCQVTVKLPLMKINFDMSSLVMSLAQSAIVYATKGITRCL
LNETTNKKNEKELVLNTEGINLPELFKYSEVLDLRRLYSNDIHAMASTYGIEAALRVIEK
EIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQ
ATLMGSHDELRSPSACLVVGKVVRGGTGLFELKQPLR
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgttgggctcaaagaacatgccctggcggaggctgcagggcatttcctttgggatgtat
tcggcggaagaactcaagaaattaagtgttaagtccattacgaaccctcgttacctggac
agtctggggaacccatcggtgaatggcctgtacgatttagctttgggccctgcagattcc
aaagaggtgtgctccacttgcgtgcaagacttcaacaactgctctggccacctgggccac
attgaccttccgctcacggtgtacaaccctctcctctttgataaactctacctgctgctc
cggggctcctgtttaaactgtcacatgctgacctgcccccgtgctgtgattcacctctta
gtgtgccagctgcgagttctggaagtgggtgccctacaggcagtctatgagcttgagaga
attctgaacaggtttctagaagaaaatgctgatcctactgccttcgaaattcaggaagag
ttggaacagtatacagccaaaatcgtacagaacaatctgttgggatcccatggtgctcat
gtgaaaaatgtttgtgagagcaggagcaaactcattgcttacttctggaaggcacatatg
actgctaagcggtgtccccactgcaagaccgggcggtcagttgtccgaaaggagcacaac
agcaagctgacagtcacatacccagccatggtgcacaagaaggctggccagaaggacaca
gagcccctgggaattgaggaagctcagataggaaaacgagggtacctgacacccaccagc
gcccaagaacatcttaccgccctttggaagaatgaaggattctttctgaattaccttttt
tcgggactggaagatgtcgatgtggagtctagattcaatcccagtatgttctttttggat
ttcctggtggtgccaccctcaaggtatcgccctgtcaatcggcttggggaccagatgttt
accaacggccagacggtgaacttgcaggctgtcatgaaggatatggttctgatccgaaaa
cttctggcactgatggcccaagaacaggaactgccgtgtgaggtggcagcacctgccaag
gatgaggaaaaagactcttctattgttctggaccgatcctttttgagtttgcttccaggc
cagtccctcacagacaaactttacaacatttggattcgtcttcagagccatgtcaatatt
gtatttgatagtgagatggacaaattaatgatggaaaagtatcctggcatcagacagatc
ctggagaagaaggatggcttattccgaaagcacatgatggggaagcgagtagactacgcg
gcccgctcagtcatctgcccagacatgtacattaacaccaacgaaattggaattcccatg
gtgtttgccacaaaactgacctaccctcagccagtcaccccctggaatgttcaggaactg
aggcaagccgtcatcaatggccccaatgtgcacccaggagcctccatggtcatcaacgag
gatggcagccgcacagccctgagtgccgttgacctgacccagcgggaagccgtggccaaa
cagctcctgacaccagccacaggggcacctaagccccaggggacaaaaattgtgtgccgg
catgtgaagaatggcgacatcctcctgctgaaccgacagcccaccctgcacagaccctct
atccaggcacaccatgcccgcatcctgccggaagagaaagtcctacggctccactatgcc
aactgcaaggcgtataatgctgacttcgatggagacgagatgaatgcccacttcccccag
agtgaactgggccgggctgaggcctatgtcctggcctgcacagatcagcagtacctagtc
cccaaggatggccaaccattggcagggttgatccaagatcacatggtttcgggcgcaaac
atgaccattcgaggttgctttttcactcgggagcagtacatggagctgctgtaccgagga
ctcacagacaaggtggggcgtgtgaagctctttcctcctgccatcctgaagccctttcca
ctgtggacaggaaagcaggttgtgtcaacgctgctcataaacataatcccagaagaccac
gtcccactgagcttatcgggaaaggcgaagatcagtggcaaagcctgggtacaggagtcc
cctcggcctgttcctggctttaaccctgactccatgtgcgagtcccaggtgatcatcaga
gaaggggaactgctgtgtggggtgctggacaaggcgcactatgggagctccgcctatggc
ctagtccactgctgctatgagatctatggtggggagaccagcggcaaggttctcacctgc
ctggcccgcctcttcaccgcctacctgcagctctacagaggtttcaccttgggcgtggaa
gacattctggtgaagccgaaggcggatgcaaagagacacagggtcattgaagagtccacc
cactgtgggccacgggctgtcagggctgcattaaacctgccagaagctgcgtcatgtgat
gaggtccgagggaaatggcaggatgcccatctgggcaaagaccagagggattttaacatg
attgatctgaagttcaaggaggaagtgaaccattacagcaatgagattaacaaggcgtgc
atgccatttggcctgcacagacaattcccagagaacaacttgcagatgatggtacagtct
ggagccaaagggtcgactgtgaacaccatgcagatctcatgcctgctgggccaaattgaa
ttggaaggtcggagaccccccttaatggcatctggcaagtcactgccctgctttgagcct
tatgagttcacccctagggccggcggtttcgtcactggcagattcctcactggcatcaag
cctcctgagttcttcttccactgcatggccgggcgagagggactagtggacaccgctgtg
aaaaccagccgctccggctacctccaaaggtgcatcatcaagcacttggaggggctggtg
gtccagtatgatctgaccgtgcgcgacagtgatggcagcgtggtccagttcctctacggg
gaggacggcctggatatccccaagactcagttcctgcagcccaagcagttccccttcctc
gccagcaactacgaggtgataatgaaatcgaagcatctccaggaggttttatccagagca
gatccccagaaagctctccgtcacttcagagccatcaaaaaatggcaaagcaagcatccc
aacaccctgctgagaaaaggcgccttcttgagttattcacagaaaattcaagcatctgtg
aaagccttgaaccttgagggtgggaaccagaatggtcgcagccttgggactcaccagatc
ttgaagatgtggagtgagttagatgagcagagtcggaggaaataccagaagaaggcagct
ccttgtcctgaccccagtctggctgtctggcgcccagacatctactttgcatcagtatcc
gaaacatttgaaaagaagatggatgactacagcgttgagtgggcatctcaagcagagaag
agttatgagaaatcagagctttctcttgacaggttgaggaccctgctgcagctgaagtgg
cagcgctcgctgtgtgacccgggtgaggccgtgggcctgctggccgcccagagcattggg
gagccctccacgcagatgaccctgaacactttccactttgcgggcagaggcgagatgaac
gtcaccctgggcattccaaggttgagggagatcctcatggtggcgagtgccaacatcaag
acgcccatgatgagcgtgcctgtgttcaacaccaagaaagccctaaagagagtgaaaagc
ctgaagaagcagctcaccagagtgtgcttaggggaggtgttggagaaaattgatgtccag
gagtcgttctgtgttggagacaaacaggacaagtttcaggtgtaccggctgcggtttcag
ttcctgccgcatgcgtactaccagcaggagaagtgcctgagacctgaggacatcctgcac
ttcgtggaaacaaggttctttaaaattctgatggaatccctcagaaagaagaataataaa
gcctccgctttcagaagcgttaacactcggagagccacacagcgggatctcgacaacgct
ggggagtcagagaggagtcggggagaacaggaaggcgatgaggaagaggagggccccatt
gtggatgctgaagctgaggagggagacgccgatgcttctgatgccaaacgcaaggagaag
caagaagaggaggtcgattatgagagcgaggaagaggaggtcgaggaggatgatgatgag
gacgtgcgggaggaagggcacttctctgcgaacggtgctcacgaggcccaggagcaggat
gaagaggtgggctcaggccccgaggaggacttgcctgcttccacccccctcagccggccc
cggaaatctgcccaccgcagggagccccagggagccgaggctgtggagcgccgggtgcgg
gccgtgcgtgaggcccactcgttcatagaggactatgagtacgacactgaggagagcctg
tggtgccaggtgacagtgaagctccctctgatgaagattaactttgacatgagctccctg
gtaatgtccctggcccagagtgccatcgtctacgcgaccaagggcatcacaaggtgtctc
ctgaatgaaaccaccaacaagaagaacgagaaggagcttgtgttaaacacagaaggaatc
aatctgccggagctgttcaagtactcggaggttctggacttgcgccgcctctattccaat
gacatccatgcaatggccagcacctatggcattgaggctgcactgcgggtgatcgagaag
gagatcagggatgtgtttgctgtgtatggcattgccgtggatccccgccatctttccctg
gtcgccgactatatgtgcttcgagggtgtttacaagccattgaatcgctttgggatccgt
tcaaactcctcccctctgcagcagatgacgtttgaaaccagcttccagttcctgaagcag
gccaccttgatgggatcgcacgatgagctgaggtccccttctgcctgccttgtggtcggg
aaagtcgtcaggggcgggacaggcctgtttgagctcaagcagcccctaagatag
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integrated database retrieval system
