Lutra lutra (Eurasian river otter): 125108356
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Entry
125108356 CDS
T08100
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03015
mRNA surveillance pathway
llv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125108356
09123 Folding, sorting and degradation
03018 RNA degradation
125108356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125108356
03041 Spliceosome [BR:
llv03041
]
125108356
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125108356
mRNA cycle factors
Stress granule specific factors
125108356
Spliceosome [BR:
llv03041
]
Complex C
Other components
Complex C specific factors
125108356
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_MUD2_C
RRM_10
RBD_DEAH11
RRM_5
SET_assoc
RRM_MARF1
DUF7061
Motif
Other DBs
NCBI-GeneID:
125108356
NCBI-ProteinID:
XP_047600022
LinkDB
All DBs
Position
9:128742818..128763381
Genome browser
AA seq
616 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAIATMNGMLLNDRKVFVGHFKSRRERE
AELGARAVEFTNIYVKNLHVDLDEQGLQDLFSQFGKMLSVKVMKDESGHSRGFGFVNFEK
HEEAQKAVKDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQIKQDRLTRYQGVNLYVKN
LDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAMPQPPAQAAY
YASGPPMQPSPRWTAQPPRPSSIYPPGASVVRPPAMLRRPPAQVGGVRQASTQVPPLVPH
AQRVAHIGTQTTGAGGAGYSTPSGPLLTHKYSTATHNPGVEEPAVCIPGQEPLTASMLAA
APLHEQKQMIGERLYPLIYNTHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALA
VLQAHQATELATVNVL
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggcccgggctacccgctcgcctcgctctacgtgggcgacctgcacccc
gacgtgaccgaagccatgctgtacgagaagttctcgcccgccggccccatcctgtccatc
cgcgtgtgccgcgacgtggccacccgccgctctctgggctacgcctacatcaacttccag
cagccggcggacgcggagcgggcactggacacaatgaactttgaagtgatcaaaggccag
cccgtccgcatcatgtggtctcagcgagaccccggactccgcaagtcgggtgtgggcaac
atcttcatcaagaacctggaggactccattgacaacaaagccttatatgacacgttctcc
acctttgggaacatcctctcttgcaaggtggtatgtgacgatcacggctcccgaggcttt
ggctttgtccactttgagacccatgaggcagcgcagcaggccatcgccaccatgaacggg
atgctgctgaatgaccgcaaagtcttcgtcggccacttcaagtcccgacgggagcgggaa
gcagagctgggagcgcgggccgtggagttcaccaacatttacgtgaagaacctccatgtg
gatctggatgagcagggcctgcaagacctcttctcccagtttgggaagatgctgagtgtg
aaggtgatgaaggatgagagtggccactcccgaggcttcggttttgtcaactttgagaag
catgaggaagcccagaaggcggtgaaggacatgaatgggaaggaggtgagcgggcggctg
ctgtacgtgggccgggcccagaagcgggtggaacggcagaatgagctgaagcgcaggttt
gagcagataaagcaggaccggctgacccgttaccagggtgtgaacctgtacgttaaaaac
ctggatgactccattgatgatgagaagctgagaaaagagttctctccctatggagtgatt
accagtgctaaggtgatgacagagggtggccacagcaaggggtttggctttgtgtgtttt
tcctctccagaagaggcgaccaaggccgtgaccgagatgaacgggcgcatcgtgggcacc
aagccgctgtacgtggcactggcccagcgcaaagaggagcggaaagccatcctcaccaac
cagtacatgcagcgtctctccacggtgcgggccctgggtggccccctcctgggctccttc
cagcagcccgccagctacttcctgcctgccatgccccagcctccagcccaggctgcgtac
tacgcctctggcccccccatgcagccctcccccaggtggacagcccagcctccgagaccg
tcctccatctaccctccaggtgcctctgtggtccggccaccagccatgttgcggcgtccc
ccggcccaggttggcggtgtcaggcaggcctctacccaggtgccacccctggtgccccac
gcccaaagagtggcccacattggtacccagaccacaggagccggcggggccggatattct
accccaagcgggcctctcctgacacacaaatactccacagcaacacacaaccctggggtg
gaggagcccgctgtgtgcatcccgggacaggagcccctgacggcgtccatgctggctgca
gcgccgctacatgagcaaaagcagatgattggtgagcgtctgtatccccttatctacaat
acccacacccagctggccggcaagatcacgggcatgctactggagatcgacaactcggag
ctgctgctcatgctggagtccccagagtccctcaatgccaaggtagaagaggccttggca
gtgctgcaggcacaccaggccacagagctggcgactgtgaatgtgctctga
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