Lutra lutra (Eurasian river otter): 125108618
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Entry
125108618 CDS
T08100
Name
(RefSeq) LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase DHX57
KO
K13026
ATP-dependent RNA helicase DHX57 [EC:
5.6.2.6
]
Organism
llv
Lutra lutra (Eurasian river otter)
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
llv03012
]
125108618
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125108618
Translation factors [BR:
llv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125108618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
RWD
DEAD
HA2_C
HA2_N
zf-CCCH
zf-CCCH_4
zf_CCCH_4
UBA
nSTAND3
NB-ARC
AAA_22
AAA_19
NPHP3_N
AAA_14
Torus
zf-CCCH_2
Viral_helicase1
Motif
Other DBs
NCBI-GeneID:
125108618
NCBI-ProteinID:
XP_047600657
LinkDB
All DBs
Position
9:complement(31678911..31734995)
Genome browser
AA seq
1384 aa
AA seq
DB search
MSSSVRRKGKPGKGGGKGSSRGARGGRSHTNKSHGGGGGGSGGGSAGNRKASSRIWDDGD
DFCIFSESRRSSRPSNSSVRKGEARPRWKPEAKVPLQTLHMTSENQEKVKALLRDLQEQD
ADAGSERGISGEEEDDEPECDDEQYWSAGREASLVPDCDPLEYAGSGPMEPHSPEFTVST
FAVQKLSRYGFDTERCQAALRLCDGDVGASLEHLLTQCFSETFGEKMKSSEAVVSVSLDE
CVEQRQEEAFALKSICGEKFIERIQNRVWTIGLELEYLTSKFCKSKQKESTKNTQDATLE
VCKFYLKGNCKFGSRCKFNMKXAPNQIVGRAERIIDDSHLNAXEDASFLYELEIRFSKDH
KYPYQAPLVAFYSTNENLPLACRLHISEFLYGKALTFAETSEPVVYSLITLLEEESEIVN
LLTNTHHKYSVPPVNFLPVSSGTRINNPVCRKPVIPNNSFASNQIPEVEKESEPEEETDE
DEGPAPVIVENESYVNFKKKISKRYDWQAKSVHAENAKICKQFRIKQASRQFQSILQERQ
SLPAWEERETILKLLSEHQVLVISGMTGCGKTTQIPQFILDDSLNGPPEKVANIICTQPR
RISAISVAERVAKERTERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDTALQGV
THIIVDEVHERTEESDFLLLVLKDIVLQRPTLQVILMSATLNAELFSEYFSSCPIITIPG
RTFPVDQFFLEDAIAVTRYVLQDGSPYMRSAKQMTKEKLRARRSRTAFEEVEEDLRLSLH
LQPQDSVKDAVPDQQLDFKQLLARYKGVSKSVIKTMSIMDFEKVNLELIEALLEWIVDGK
HSYPPGAILVFLPGLAEIKMLYEQLQSNSLFNNRRSHRCVVHPLHSSLSSEEQQAVFVKP
PAGVTKIIISTNIAETSITIDDVVYVIDSGKMKEKRYDASKGMESLEDTFVSQANALQRK
GRAGRVASGVCFHLFTSHHFNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSTHNLQSVFS
RLIEPPHTDSLRASKIRLRDLGALTPDEKLTPLGYHLASLPVDVRIGKLMLFGSIFRCLD
PALTIAASLAFKSPFVSPWDKKEEANQKKLEFAYANSDYLALLRAYKGWQLSTKEGMRAS
YNYCRQNFLSGRVLQEMASLKRQFTELLSDIGFVKEGLRAREIEKRAQGGDGILDATGEE
ANSNAENPKLISAMLCAALYPNVVQVKSPEGKFQKTSTGAVRMQPKSDELKFVTKNDGYV
HIHPSSVNYQVRHFDSPYLVYHEKIKTSRVFIRDCSVVSVYPLVLFGGGQVSVQLQRGEF
IVSLDDGWIRFAAASHQVAELVKELRCELDQLLQDKIKNPSIDLCTCPRGSRIISMIVKL
VTTQ
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttcagtaagaagaaaaggcaagccaggcaaaggaggtggaaaagggtcgtct
agaggagccagaggaggcaggagtcacaccaataaatcgcacgggggcgggggcggcggc
agtggtggtggcagtgctggcaatcggaaggcctcgagtagaatttgggatgatggcgat
gacttttgtatcttcagtgaatcaagacgctcatccagacctagcaacagtagtgtaaga
aaaggagaggcacgccccagatggaagcccgaagccaaagtgccccttcagaccctgcac
atgacttctgagaaccaggagaaagtgaaagctcttctccgggacctgcaggagcaagac
gcagacgctggatctgaaagaggcatttccggggaggaggaagatgatgaacccgagtgt
gatgatgaacagtactggtctgctggacgagaagcttcccttgttcctgactgtgaccct
ttggaatatgctggctcaggcccaatggagcctcatagtccagagtttaccgtctcgaca
tttgcagtgcagaagctttccaggtacggcttcgacactgagcgctgtcaggcagccctg
aggctctgtgatggagacgtcggggcatcactagaacatctgctcacacagtgtttttca
gagacatttggggagaagatgaagagctcggaggcagttgtcagtgtcagcttggatgag
tgtgtggaacagcggcaggaagaggcatttgctctcaagtccatctgtggagagaaattt
atagaaagaattcagaaccgagtctggaccattggattagaactggagtacttgacgagt
aaattctgcaaatccaagcaaaaggaaagtaccaaaaatacacaggacgctacacttgaa
gtctgtaaattttacctcaaaggaaattgtaaatttggatcaagatgcaaattcaacatg
aagnntgcccccaatcagattgtcggaagagcagaaagaattatagatgattctcatctt
aatgccnacgaagatgcctcttttttatatgaactcgaaattcgattttctaaagaccac
aaatacccttaccaagctcctcttgtggcattttattccaccaatgagaatctacctctg
gcttgtcgtttacatatttctgaattcctttatggcaaggccttgacatttgcagaaact
tcagaacctgttgtgtattctttgataacccttttagaggaagaatcagaaatagtcaat
ttactgacaaatacccatcacaagtacagtgtccctcctgtgaactttctgccagtatcc
tctgggaccagaataaataatcctgtctgtcgtaaaccagtgattccaaataattctttt
gcttcaaatcaaattcctgaagttgaaaaagaatcagaacctgaggaggagacagatgag
gatgaaggtcctgcaccagttatagtggagaatgaaagctatgtgaactttaagaaaaag
atttccaaaagatatgactggcaggcaaaatcagtacatgctgaaaatgctaaaatctgc
aagcagttccgaataaaacaggcttccagacagttccagtcaattctgcaagaaagacaa
tcactccctgcttgggaagaaagagaaaccattcttaaattgttgagcgagcaccaagtg
cttgttataagtggtatgacgggatgtgggaaaactacacagattcctcagtttattctg
gatgattctctgaatggaccgcctgagaaagtggctaacatcatctgtacccaaccccga
cgaatttcagcaatatctgttgctgaacgtgttgctaaagaaaggacagaaagagtgggt
ctgactgtggggtaccagatccggctagaaagtgtcaagtcctcagccaccaggctgtta
tactgcaccacgggcgtcctcctgagaaggctggaaggagacacagctctccaaggagtt
acccatatcatcgttgatgaagttcatgagaggacagaagaaagtgacttcttgctgcta
gtcttgaaggacattgtgttgcagagaccaactcttcaagttattctaatgagtgcaact
ttaaatgctgagctcttttcagaatatttcagttcctgcccaattattactataccaggt
cgtacatttcctgttgatcagttttttctggaagatgcaattgctgtgacaaggtatgtg
ttacaggacgggagcccgtatatgcgctccgcgaagcagatgacaaaggaaaagctgaga
gcaaggcgcagcagaactgcatttgaagaagtagaggaagacctgaggctctctcttcac
ctccagccccaggattctgtcaaagatgcagtgccagaccagcagttagatttcaagcag
ctcctggcccgctataaaggggttagcaaatcagtcatcaaaacaatgtccatcatggat
ttcgaaaaggttaatcttgaattaatagaggccttgttagagtggattgtagatggaaag
cactcctaccctccaggtgctatacttgtatttttaccgggactagcagaaatcaaaatg
ctgtatgaacagctacagtctaattctctcttcaacaacagacgcagtcatcgatgtgtg
gtacacccacttcattcatctttatccagtgaagagcagcaggcagtgttcgtaaaaccc
cctgcgggtgtaaccaagatcatcatttccaccaacattgcagagacatccataaccatc
gatgatgttgtctatgtcatcgattccgggaaaatgaaagagaagagatatgatgccagc
aaaggaatggagagcctagaagatactttcgtctctcaagccaatgctctgcagaggaaa
ggtcgagcaggccgtgttgcctctggggtctgcttccacttattcaccagccatcacttc
aatcaccagctgttaaagcagcagcttccagagattcaaagagtgccgttggagcagctg
tgtctgagaattaaaattttagagatgtttagcactcacaatctccagtctgtgttctct
cggctcattgagccgccacacactgactctctccgcgcctcaaaaatacgattacgagac
ttaggagcattaactccagatgaaaagctgacccccctagggtatcacttggcctctctg
cccgtggatgtgagaatcggcaaactgatgctgtttgggtctatcttccgctgtctggat
cctgccctcaccattgctgccagtttggcttttaagtctccttttgtgtctccctgggat
aaaaaagaggaagctaaccagaaaaagctagaatttgcatatgcaaacagcgactatctg
gctcttctacgagcatataagggatggcagctaagtacgaaagaaggaatgcgtgcaagt
tacaattactgcagacagaacttcttgtctggaagagttcttcaggaaatggccagcctc
aaacgacaattcactgaactgttatcagatataggctttgtaaaggagggactcagagca
agggaaattgagaaaagagcccaaggaggagatggtatcttggacgccacaggagaagag
gcaaactccaatgctgagaaccccaagctgatatcagcaatgctgtgtgctgctctttat
ccaaatgtagtgcaggtgaaaagcccagaagggaaatttcagaagaccagtaccggagct
gtcagaatgcaacccaaatcagatgagttgaagtttgtcaccaagaacgatggctacgtg
cacatccacccttcgtcagtgaactatcaggtcagacactttgacagcccctacctggtg
taccatgaaaagatcaaaactagtcgggtgttcattcgagactgcagtgtggtgtccgtg
tacccactggtcctgttcgggggaggccaagtgagcgtgcagcttcagagaggggagttt
attgtgtccttggatgacggttggatccgttttgcagctgcttcgcatcaggtggccgaa
ttagtaaaggaactccgttgtgaacttgaccagctcctccaggataagataaaaaaccca
agcatagatctgtgtacatgtcctcgaggatcccggatcatcagcatgattgtgaaactt
gtcaccacacaataa
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integrated database retrieval system
