Lutra lutra (Eurasian river otter): 125108702
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Entry
125108702 CDS
T08100
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03008
Ribosome biogenesis in eukaryotes
llv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125108702
09123 Folding, sorting and degradation
03018 RNA degradation
125108702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llv03021
]
125108702
03019 Messenger RNA biogenesis [BR:
llv03019
]
125108702
03009 Ribosome biogenesis [BR:
llv03009
]
125108702
03016 Transfer RNA biogenesis [BR:
llv03016
]
125108702
Transcription machinery [BR:
llv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125108702
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
125108702
Ribosome biogenesis [BR:
llv03009
]
Eukaryotic type
Pre-60S particles
RNases
125108702
Transfer RNA biogenesis [BR:
llv03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
125108702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
125108702
NCBI-ProteinID:
XP_047600844
LinkDB
All DBs
Position
9:complement(96920176..97013695)
Genome browser
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDIERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFSPGGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSVSPNTSF
TSDGSPSPIGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEETKRNSLGGDILFVGKHHPLHDFILELYQTGSTEPVDVPPELCHGMQG
KFSLDEEAVLPDQIVCSPVPMLRDLTQNTAISINFKDPQFAEDYIFKAVMLPGARKPAPV
LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVIPRGSGAGVYGNAAPPPAT
YQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNRMLQTQ
NAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggctttctttcgctggctcagccgcaagtacccgtccatcattgtcaac
tgcgtggaagagaagccaaaagaatgcaatggtgtaaagatccctgttgatgccagtaaa
ccaaatccaaatgatgtggagtttgataatctgtatttggatatgaatggaatcatccat
ccctgtactcatcctgaagacaaaccagcaccaaaaaatgaagacgaaatgatggttgca
atttttgagtacattgacagacttttcaatattgtaagaccaagacgacttctatacatg
gcaatagatggagtggcaccgcgtgctaaaatgaaccagcagcgttccagaaggtttaga
gcatcaaaagaaggaatggaagcagcagtggagaagcagcgagtcagggaagaaatattg
gcaaaaggtggctttcttcctccagaagaaataaaagaaagatttgacagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaacttgacagttattttatctgatgctagtgct
cctggtgaaggagaacataaaatcatggattatattagaagacaaagagcccaacctaac
catgacccaaatactcatcattgcttatgtggagcagatgctgatctcattatgctcggc
cttgctacacacgaacccaactttaccatcattagagaagaattcaaaccaaataaaccc
aaaccatgtggactttgtaatcagtttgggcatgaggtcaaagactgtgaaggtttgcca
agagaaaagaagggaaagcatgatgaacttgcagatagtcttccttgtgcagaaggagaa
tttatcttccttcgtcttaatgttcttcgtgagtatttggaaagagagctcaccatggcc
agcctgccgtttacatttgatattgagaggagtattgatgactgggtcttcatgtgcttc
tttgtgggaaatgacttccttcctcacttgccatcattagaaattagggaaggtgcaatt
gaccgtttggttaacatatacaaaaatgtggtacacaaaactgggggttaccttacagaa
agtggttatgtcaatctgcaaagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagagaaaggatgatgaggacagttttagaagacgacagaaagaa
aaaagaaagagaatgaagagagatcaaccagctttctctcctggtggaatattaacccct
catgccttgggttcaagaaattcaccaggttctcaagtagccagtaatccaagacaagca
gcctatgaaatgaggatgcagaataactctagtccttcagtatctcctaatacgagtttc
acttctgatggctccccatctccaataggaggaattaagcgaaaagcagaagacagtgac
agtgaacctgagcctgaggataacgtcaggctatgggaagctggttggaagcagcggtac
tacaagaacaaatttgacgttgatgcagctgatgagaaattccgtcgtaaagttgtacag
tcttatgttgaggggctctgctgggttcttcgatattattaccagggctgtgcttcctgg
aagtggtattatccattccattatgcaccatttgcttcagactttgaaggtattgcagac
atgccatctgattttgagaagggcactaaaccatttaaaccattggaacaacttatggga
gtttttccagctgcaagtggtaactttctacctccatcatggcggaagctcatgagtgat
cccgattctagtataattgacttctacccagaagattttgctattgatttgaatgggaag
aaatatgcatggcaaggtgttgctctgttgccttttgtggatgagcgaaggctgcgagct
gctctagaagaggtatacccagacctcactccagaagagactaaaagaaacagtcttgga
ggtgacatcttatttgtgggcaaacatcacccactccatgacttcattttagaactctac
cagacaggttccacagagccagtggatgtaccacctgaactatgtcatgggatgcaagga
aagttttctttggatgaagaagctgttcttccagatcagatagtatgttctcctgtcccc
atgttacgggatctgacacagaacactgcaatcagtattaattttaaagacccacagttt
gctgaagactacatttttaaagctgtaatgcttccaggagcaagaaaaccagcaccagta
ctgaaacctagtgactgggaaaagtccagcaatggacggcagtggaagccccagcttggc
tttaatcgggaccggcggcctgtccacctggatcaggctgcatttaggactttgggccat
gttataccaagaggctcaggggctggcgtttatggcaatgctgcaccaccacctgcaact
tatcaggggaacttatacaggccgctgttgagaggacaagcccagattccaaaacttatg
tcaaatatgaggccacaggattcctggcggggtcctcctcctcttttccagcagcaaaga
tttgacagaggcgttggggctgaacctctgctaccatggaaccggatgctccaaacccaa
aatgcagccttccagccaaaccagtaccagatgctggctggacctggcgggtatccaccc
agacgtgatgatcgtggagggagacagggatatcccagagaaggaaggaaataccctttg
ccaccaccctcaggaagatacagttggaattag
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