Lutra lutra (Eurasian river otter): 125108779
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Entry
125108779 CDS
T08100
Name
(RefSeq) ATP-dependent RNA helicase DDX1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
llv
Lutra lutra (Eurasian river otter)
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
llv03041
]
125108779
03016 Transfer RNA biogenesis [BR:
llv03016
]
125108779
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125108779
Spliceosome [BR:
llv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125108779
Transfer RNA biogenesis [BR:
llv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125108779
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
125108779
NCBI-ProteinID:
XP_047601063
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All DBs
Position
9:11533075..11568553
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AA seq
766 aa
AA seq
DB search
MGPVLRKACLDIQLQIFIRFLICGFSWRKFREMGVMPEIAQAVEEMDWLLPTDIQAESIP
LILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMN
PYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLTKGKHYYEVSCHDQGLCRVGWSSMQA
SLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL
AFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDSCVVKSQHTGN
AQVAQTKFLPNAPKALIVEPSRELAEQTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLS
VLDNGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQI
TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDR
LWERLGKNHIRTDDVHAKDNTRPGANSSEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCR
TKIDCDNLEQYFMQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDV
AARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR
GKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKR
AAGGGNYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQLFRTF
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgggaccagttcttagaaaggcctgcttggatatacagcttcagatcttcattaggttt
ttgatctgtggattttcctggaggaaatttagagagatgggtgttatgcccgagattgct
caagccgtagaagagatggattggcttctcccaactgatatccaggctgagtctatcccc
ttgatccttggcggcggtgatgtacttatggctgcggaaacaggaagtggaaaaactggt
gctttcagtattccagttatccagatagtatatgaaactctgaaagaccaacaggaaggc
aaaaaaggaaaaacaacaattaaaactggtgcttcagtgctcaacaaatggcaaatgaac
ccatatgacagaggatctgcttttgcaattgggtccgatggtctttgttgtcagagcaga
gaagtgaaggagtggcatggatgcagagcgactaaggggttaacgaaagggaagcactac
tacgaagtgtcctgtcatgaccaaggattatgcagagtcgggtggtcttccatgcaggct
tccttagacctaggtaccgacaagtttggatttggctttggtggaacaggaaagaaatcc
cataataaacagtttgataattacggagaggaattcactatgcatgataccattggatgt
tatctcgatatagataaggggcatgtcaaattctccaaaaatggaaaagaccttggtctg
gcctttgaaataccaccacatatgaagaaccaagccctctttcctgcttgtgttttgaag
aatgctgaactaaagtttaactttggtgaagaagagtttaagtttccaccaaaagatggt
tttgttgctctttccaaggcaccggatagttgtgttgtcaaatcacagcacacaggtaat
gcgcaggtggcacaaacgaagtttctccccaatgctccaaaagctctcatcgtcgagccc
tcccgagagttagctgagcaaactttgaacaacgtcaagcagtttaagaaatatgttgat
aatcctaaattaagggagcttctgataattggaggtgttgcggcacgggatcagctctct
gttttagataatggggtagatatagtcgttggcactccaggaagactagatgatttggtg
tcaactggaaagctgaacttatcccaagttagattcctggtcctggatgaagctgatggg
cttctttcccaaggttactctgattttataaataggattcataatcagattcctcaaatt
acctctgatgggaaaagacttcaggtgattgtttgctctgctactttgcattcttttgat
gtgaagaagctgtctgagaagataatgcattttcccacctgggttgatttaaaaggagag
gactccgttccggacactgtacaccatgtggttgtcccggtgaatcccaaaactgacaga
ctctgggaaaggcttgggaaaaaccacattagaactgatgatgtacatgcaaaagataac
acaaggcctggtgctaatagttcagagatgtggtctgaagctattaaaatcctgaagggg
gagtatgctgtccgggcgatcaaggaacacaagatggatcaagcaattattttctgtaga
accaaaattgactgtgataacttggagcaatattttatgcaacaaggaggaggacctgat
aaaaaaggacatcagttctcatgtgtttgtcttcacggggacagaaagcctcatgaaagg
aagcaaaatttggaaagatttaagaaaggagatgtaagattcttgatttgcacagatgta
gccgccagaggaattgatattcatggtgttccttatgttataaatgtcaccttgcctgat
gaaaagcaaaactatgtacatcgaattggcagagtaggaagagctgaaaggatgggtctg
gccatttccttggtagcaacagagaaagaaaaggtttggtaccatgtatgtagcagccgt
ggaaaagggtgttataacacaaggctcaaggaagacggtggctgtactatatggtacaat
gagatgcagttgctgtctgagatagaagagcatctgaattgcaccatttctcaggttgaa
ccagatataaaggtaccagtggatgaatttgacgggaaagtcacctatggtcagaaaagg
gctgctggtggtggaaactataaaggccatgtggatattttggcacctacggttcaagag
ttggctgcccttgaaaaggaggctcagacatctttcctgcatcttggctaccttcctaac
cagctgttccgaaccttctga
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